Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03875 ATGGCTGTCGTGGCCAGTCTCCTCTGCATTATCTCCCTAATGTGGACAGTTGAAGCTCGAATTCCAGGGATTTACTCTGGCGGTTCATGGCAGAGTGCCCATGCTACCTTCTATGGAGGATCTGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGAAACCTGTACAGCCAAGGGTACGGAGTGAACACAGCGGCATTGAGCACAGCACTCTTCAACAGTGGTCTTAGCTGCGGTGCATGTTTTGAGATCAAGTGTGCAAACGACAGGCAGTGGTGTCACTCCGGCAGTCCTTCCATCTTCATTACCGCAACCAACTTCTGTCCACCGAACTATGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCAATGTTCCTCAAGATTGCTGAGTACCGCGCCGGCATCGTCCCTGTTGCCTATCGCCGGGTGCCATGCAGAAAGCACGGTGGGATAAGGTTCACCATCAATGGTTTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTAGCGGGTGCAGGGGATATCGTGCGCGGGTACGTGAAAGGCTCCCGAACCGGGTGGATGCCGCTGAGCCGAAACTGGGGCCAGAACTGGCAGTCTAACGCGGTTTTGGTGGGCCAGGCCCTGTCCTTCCGCGTTACAGGCAGTGACCGTCGCACCTCCACCTCTTGGAACATTGCTCCACCCAATTGGCAATTCGGCCAGACTTTCACTGGAAAGAACTTCCGGGTCTGA 771 0.559 MAVVASLLCIISLMWTVEARIPGIYSGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKHGGIRFTINGFRYFNLVLISNVAGAGDIVRGYVKGSRTGWMPLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIAPPNWQFGQTFTGKNFRV. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03875 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 162 IPR007112 -
Seca4g03875 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Seca4g03875 256 FunFam Expansin 19 158 - -
Seca4g03875 256 Pfam Lytic transglycolase 65 152 IPR009009 -
Seca4g03875 256 PANTHER EXPANSIN-A15 15 254 IPR002963 GO:0009664
Seca4g03875 256 SMART dpbb_1 65 152 IPR007112 -
Seca4g03875 256 SUPERFAMILY Barwin-like endoglucanases 29 180 IPR036908 -
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Seca4g03875 256 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Seca4g03875 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Seca4g03875 256 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Seca4g03875 256 Gene3D - 162 254 IPR036749 -
Seca4g03875 256 FunFam Expansin 162 254 - -
Seca4g03875 256 CDD DPBB_EXPA_N 30 157 - -
Seca4g03875 256 Gene3D - 20 158 IPR036908 -
Seca4g03875 256 Pfam Expansin C-terminal domain 163 240 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03875 Seca-Chr4 68181720 68183510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03875 1 256 Expansin Gene Family AT2G39700 84.047 3.13e-163 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03875 - - gmx:100809139 522.316