Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03860 ATGGATCCTTATCTGGAAGACACTGACTTCTCAGAAACTGTCAAATTCATAAGCCAAACCCTGATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACTTGCTGAGCTTGCAAGTCACCGAGAAATCACTTTATGAAGCTCTCAAAGATCAACACCCCTCAGATATTCAGAGCCCGGACGGTAGAACCATCAGTGGCAACAGCAGCAGCTGCAGCTTCAACAACTTTTTACATGACAATTCTCGTGGGTTGACTCCTCCTTCTTGGGATACCCCTGTTTCTGTTCTTGGTGATCATGCTAGCAATGAAATGTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGACACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTCCCTCCAGGACCTCAGCTTGTGACTGGTCTTGAGTCAACGGAAAAAGCACCTGTTATGGTTGGGGATAATTCATTTGGGTTGAAAGGTAGAAAGAATCATGAGGGCAGAAAGAATCATCAGCGCGAAGAAAGTGATACCACTGAAATAGGGAGGAGTAACAAACAATCAGCAGTTGGTGTTCTTGACGAGGATGACTTATCAGATATGTTTGATCAATTGATGCTTAGTGTGGAAAGTGTGCCAGGTAAAAAGCCACCTTCATCTGATGGAGAGAAGGCTCATCCTAAGAGAAAAGGCAGGAAGAAGGAAACAGTAGATTTGAGGGATCTTCTGTTTCTATGTTCACGAGCTCTACATGCCAATGACAACAGGACTGCTAATGAACTACTACAGCAGATTAGGCAGCGTTCCTCTCCCTTTGGGGATGGATCACAAAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGTTGGTGATAGTACCTGCACACAAGTATATTATTCCTCTCCGAGCTCCAAAAGGATCACTGCTGCTGCGTTTTTGAAAGGTTACCAAGTTTTTCTATCTACTTGCCCATACAAGCAGTTTGCATTTTTATTTGCAAATAAAATGATTATGAAAGTAGCTGAAAAAGCAGAAACCATTCATATTATCGATTTTGGTATCGTATATGGTTTCCAATGGCCATTACTTATCAAGTCTTTATCAAATAGAGATGGTGGACCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAGCCTGGCTTTCGTCCAACAGAAATAGTTGTGGAGACTGGTCACCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACCATGCCATAGCATCACAGAACTGGGAATCCATTCAAGTTGAAGACCTTAAAATTGAGAGCAACGAGCTAGTTGCTGTGAACTGTATGATGAGGTTCAGGAATTTACTGGATGAGACTATTGAAGGGATCAGTCCAAGAGACGCAGTTCTGCATTTGATCAGGAAGCTAAATCCGGATATTTTTACTCAGTCCATCTACAATGGATCTTATAATTCCCCTTTCTTTGCCACGCGGTTTAGGGAGGCTCTGTTCCATTATTCTGCTTTTTATGATATGTGTGACACTGTCATGCCCAGGGAAGACGAATGGAGGGTGATGTTTGAGAGAGAGATTGTGGGTCGGGAGGCTATGAATGTTTTAGCATGTGAAGGCTTCGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATGCAAGGGCTGGTTTCAAGCAGCTCCCGCTGAACCAGGATTTAATGGCCAACTTTAGGACTAAGTTAAGGGAATGGTACCGCAGAGATTTTGTCCTTGATGAAGACAATAACTGGATGCTTCAAGGGTGGAAGGGCCGCATTTTCTATGCTTCCACTTGTTGGGTCCCGGCATAA 1875 0.4395 MDPYLEDTDFSETVKFISQTLMEENIEQRPFYDLLSLQVTEKSLYEALKDQHPSDIQSPDGRTISGNSSSCSFNNFLHDNSRGLTPPSWDTPVSVLGDHASNEMLDLDSSVSKLLAQNVISDTDSVSQFMRGLEEASKFLPPGPQLVTGLESTEKAPVMVGDNSFGLKGRKNHEGRKNHQREESDTTEIGRSNKQSAVGVLDEDDLSDMFDQLMLSVESVPGKKPPSSDGEKAHPKRKGRKKETVDLRDLLFLCSRALHANDNRTANELLQQIRQRSSPFGDGSQRLAHYFANGLEARLVGDSTCTQVYYSSPSSKRITAAAFLKGYQVFLSTCPYKQFAFLFANKMIMKVAEKAETIHIIDFGIVYGFQWPLLIKSLSNRDGGPPKLRITGIEFPQPGFRPTEIVVETGHRLADYCKRFNVPFEYHAIASQNWESIQVEDLKIESNELVAVNCMMRFRNLLDETIEGISPRDAVLHLIRKLNPDIFTQSIYNGSYNSPFFATRFREALFHYSAFYDMCDTVMPREDEWRVMFEREIVGREAMNVLACEGFERVERPETYKQWQVRNARAGFKQLPLNQDLMANFRTKLREWYRRDFVLDEDNNWMLQGWKGRIFYASTCWVPA. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03860 624 MobiDBLite consensus disorder prediction 160 195 - -
Seca4g03860 624 MobiDBLite consensus disorder prediction 167 189 - -
Seca4g03860 624 ProSiteProfiles GRAS family profile. 238 622 IPR005202 -
Seca4g03860 624 MobiDBLite consensus disorder prediction 225 242 - -
Seca4g03860 624 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 612 IPR005202 -
Seca4g03860 624 Pfam GRAS domain family 247 621 IPR005202 -
Seca4g03860 624 MobiDBLite consensus disorder prediction 218 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03860 Seca-Chr4 67954223 67956118 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03860 13 624 GRAS Transcription Factor Family AT1G07530 48.699 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03860 GRAS 1.6e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03860 - - tpra:123918580 843.573