Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03857 ATGAATCCTAACTTCCCTGGCGCTAGCAATTTCATGGCTGATCCTTCTCTGGAAGACACTGACTTTTTTGAAACTGTCAAGTTCATAAGCCAAACCCTCATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACCCAGTGACCTTGCAACTCACAGAGAAGTCATTTTACGATGCCCTCAAAGACAATGTCCCTCTTTCCCCTGGTCAACATCCCTCAGATAGTCAGAGCCCCGATGGAAATGGAACCACCAGCAGCAGTGGCAGTAGCAGCAGTGCCAACAACTTTTTTTTACATGAAAATTCTAGTGAGTTGACTCCCCCTTCTCAGGATACCCCTGTTTCTGTCCTTGGCGATCATGCTTTTCAGCTTAACTCCCATGTCATTTCTAGAACACCCTCTCAATTTCCTTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGATACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCTTCCTCTAGGGCCTCAGCTTGTGACTGGTCTTGAGTCAAAGGAAGAAGCACCCATTATGGTTGGGGAGAATTCGTCTGGGTTTAAAGGTAGAAAGAATCATGAGGGCAAAAAGAATCATGAGCGTGAAGAAAGTGATACCACTGAAGTAGGTAGAAGTAACAAGCAATCAGCAGTTGGTGATGTTGATGAGGATGACTTATCAGATATGTTTGATCGACTGATGGTTAGTGTGGAAAGTGAGCCAGGTGAAAAGCCACCTTCTGATGGATGGAAGGATCATTCTAAGAGAAAAGGCAGGAAGAAGGGAGCAGTAGATTTGAGGAATCTTCTGCTTCTATGTTCACAAGCTCTGCATGCCAATGACAACAGGGCTGCTAATGAACTACTACTGCAGATTAGGCAGCATTCTTCTCCCTCTGGGGATGGATTACAGAGGTTGGCTCATTACCTCGCCAATGGCCTTGAGGCCCGTTTGGTTGGTGATGCTGATGGTACCCGTGCACAAGTATATTATACCTCTCCGAGCATCAAGAGCATCACAAATGTTGAGTTTCTGAAAGGCTACGAACTTTTTCTATCTACTTGTCCATACAAGAAGTTTGCATTTTTATTTGCAAATAAAATTATTATGAAAGTAGCTGCAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCATTACTTATTAAGTTTCTATCAAATAGAGATGGTGGACCTCCCAACCTGAGAATTACAGGTATAGAGGTTCCCCAACCTGGCTTTCGTCCAACAGAGATAATTGAGGACACTGGTCGTCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATCCTATAGCATCACGGAACTGGGAAACCATTCAAATTGAAGACCTGAAAATTGAGAGCAATGAGCTAGTTGTTGTGAACTGTATGATGAGGTTCAAGAATTTACTGGATGAGACTATTGAAGGGAACAGTCCTAGAAATGCGGTTCTGCATTTGATTAGGAAAGTAAATCCAAATATTTTTACTCATGCCATCTATGGTGGACCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTCTGCTTTTTATGATATGTGTGACACTGTCATGCCCCGGGAAGACACATCAAGGATGATGATTGAGAGAGACATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCCCAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGGACCAGGAATTAATGGCCAACTTTAGGACTAAGTTAAGGGAATGGGGCCAGAGAGATTTTATCCTTGATGAAGACGATAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTTTCTCGAACTGAACAGTTTCCCTATCAAGTTAAGGTTATTAAACCAAAGCTTGCAAGACCTAGAAGGATTCCTGTCACCACATGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGAGTGGAATCACCATCAGCGGCAACAGCAGCAGCTACAGCAGCTTCAACAACTTTGTACATGACAATTCTCGTGGGTTGACTCCTCCTGCTCTGGATACCCCTGTTTCTGTTCTTGGTGATCATGCTAGCAATGGAATGTTAGATTTAGATGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGACACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTCCCTCCAGGACCTCAGCTTGTGACTGGTCTTGAGTCAACGGAAGAAGCACCTGTTATGGTTGGGGAGAATTCATTTGGGTTGAAAGGTAGAAAGAATCATGAGTTCATAAAAAATCATCAGCGCGAAGAAGGTGATACCACTGAAATAGGGAGAAGTAACAAACAATCAGCTGTTGGTGTTGTTGATGAGGATGACTTATCAGATATGTTTGATAAATTGATTCTTAGTGTGGAAAGTGTGCCAGGTAAAAAGCCACCTTCATCTGATGGAGAGAAGGCTCATCCTAAGAGAAAAGGCAGGAAGAAGGAAACAGTAGATTTGAGGGATCTTCTGTTTCTATGTTCACGAGCTCTGCATGCCAATGACAACAGGACTGCTGATGAACTACTACAGCAGATTAGGCAGCGTTCCTCTCCCTTTGGGGACGGATCACAAAGGTCCCATGGCCTTGAGGCACGCTTGAACTGGGAATCCATTCAAGTTGAAGACCTTAAAATTGAGAGCAACGAGCTAGTTGCTGTGAACTGTATGATGAGGTTCGGGAATTTACTGGATGAGACTATTGGAGGGAACAGTCCAAGAAACGCAGTTCTGGATTTGATCAGGAAGCTAAATCCGGATATTTTTACTCAGTCCATCTACAATGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTATGCTCTTTATGATATGTGA 3042 0.4343 MNPNFPGASNFMADPSLEDTDFFETVKFISQTLMEENIEQRPFYDPVTLQLTEKSFYDALKDNVPLSPGQHPSDSQSPDGNGTTSSSGSSSSANNFFLHENSSELTPPSQDTPVSVLGDHAFQLNSHVISRTPSQFPLDLDSSVSKLLAQNVISDTDSVSQFMRGLEEASKFLLPLGPQLVTGLESKEEAPIMVGENSSGFKGRKNHEGKKNHEREESDTTEVGRSNKQSAVGDVDEDDLSDMFDRLMVSVESEPGEKPPSDGWKDHSKRKGRKKGAVDLRNLLLLCSQALHANDNRAANELLLQIRQHSSPSGDGLQRLAHYLANGLEARLVGDADGTRAQVYYTSPSIKSITNVEFLKGYELFLSTCPYKKFAFLFANKIIMKVAAKAETLHIIDFGILYGFQWPLLIKFLSNRDGGPPNLRITGIEVPQPGFRPTEIIEDTGRRLADYCKRFNVPFEYNPIASRNWETIQIEDLKIESNELVVVNCMMRFKNLLDETIEGNSPRNAVLHLIRKVNPNIFTHAIYGGPYNSPFFATRFREALFHYSAFYDMCDTVMPREDTSRMMIERDIVGREAMNVIACEGSQRVERPETYKQWQVRNTRAGFKQLPLDQELMANFRTKLREWGQRDFILDEDDNWMLQGWKGRIFSRTEQFPYQVKVIKPKLARPRRIPVTTCDGKCIAGGIGDGSIQSGITISGNSSSYSSFNNFVHDNSRGLTPPALDTPVSVLGDHASNGMLDLDVSKLLAQNVISDTDSVSQFMRGLEEASKFLPPGPQLVTGLESTEEAPVMVGENSFGLKGRKNHEFIKNHQREEGDTTEIGRSNKQSAVGVVDEDDLSDMFDKLILSVESVPGKKPPSSDGEKAHPKRKGRKKETVDLRDLLFLCSRALHANDNRTADELLQQIRQRSSPFGDGSQRSHGLEARLNWESIQVEDLKIESNELVAVNCMMRFGNLLDETIGGNSPRNAVLDLIRKLNPDIFTQSIYNGSYNSPFFATRFREALFHYYALYDM. 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03857 1013 ProSiteProfiles GRAS family profile. 271 657 IPR005202 -
Seca4g03857 1013 ProSiteProfiles GRAS family profile. 871 1013 IPR005202 -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 850 875 - -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 201 223 - -
Seca4g03857 1013 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 928 1013 IPR005202 -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 68 95 - -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 251 273 - -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 810 831 - -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 61 95 - -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 858 875 - -
Seca4g03857 1013 Pfam GRAS domain family 280 649 IPR005202 -
Seca4g03857 1013 Pfam GRAS domain family 928 1013 IPR005202 -
Seca4g03857 1013 MobiDBLite consensus disorder prediction 195 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03857 Seca-Chr4 67881137 67887740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03857 748 934 GRAS Transcription Factor Family AT1G07530 35.593 1.28e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03857 GRAS 3.3e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03857 - - gmx:100795855 800.045