Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03855 ATGAATCCTAACTTCCCTGGCGCTAGCAATTTCATGGCTGATCCTTCTCTGGAAGACACTGACTTTTTAGAAACTGTCAAGTTCATAAGCCAAACCCTCATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACCCAGTGACCTTGCAACTCACAGAGAAGTCATTTTACGATGCTCTCAAAGACAATGTCCCTCTTTCCCCTGGTCAACATCCCTCAGATAGTCAGAGCCCCGATGGAAATGGAACCACCAGCAGCAGTAGCAGTAGCAGCAGTGCCAACAACTTTTTTTTACATGAAAATTCTAGTGAGTTGACTCCCCCTTCTCAGGATACCCCTGTTTCTGTCCTTGGCGATCATGCTTTTCAGCTTAACTCCCATGTCATTTCTAGAACACCCTCTCAATTTCCTTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTTATCACTGATACAGACTCCGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCTAGGGCCTCAGCTTGTGACTGGTCTTGAGTCAAAGGCAGAAGCACCCATTATGGTTGGGGAGAATTCGTTTGGGTTTAAAGGCAGAAATAATCATGAGGGCAGAAAGAATCATGAGCGCGAAGAAAGTGATACCACTGAAGTAGGTAGAAGTAACAAGCAATCAGCAGTTGGTGATGTTGATGAGGATGACTTATCAGATATGTTTGATCGACTGATGGTTAGTGTGGAAAGTATGCCAGGTGAAAAGCCACCTTCGTCTGATGGATGGAAGGATCATCCTAAGAGAAAAGGCAGGAAGAAGGGAGCAGTAGATTTGAGGAATCTTCTGCTTCTATGTTCACAAGCTCTGCATGCCAATGACAACAGGGCTGCTAATGAACTACTACTGCAGATTAGGCAGCATTCTTCTCCCTCTGGGGATGGATTACAGAGGTTGGCTCATTACCTCGCGAATGGCCTTGAGGCCCGTTTGGTTGGTGATGCTGATGGTACCCGTGCACAAGTATATTATACCTCTCCGAGCATCAAGAGCATCACAAATGTTGAGTTTCTGAAAGGCTACGAAATTTTTCTATCTACTTGCCCATACAAGAAGTTTGCATTTTTATTTGCAAATAAAATGATTATGAAAGTAGCTGCAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCATTACTTATTAAGATTCTATTAAATAGAGATGGTGGACCTCCCAAGCTGAGAATTACAGGTATAGAGGTTCCCCAACCTGGCTTTCGTCCAACAGAAATAATTGAGGACACTGGTCGTCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCTTTTGAGTACAATCCTATAGCATCACGGAACTGGGAAACCATTCAAATTGAAGACCTGAAAATTGAGAGCAATGAGCTAGTTGTTGTGAACTGTATGATGAGGTTCAAGAATTTACTGGAGGAGACTATTGAAGGGAACAGTCCTAGAAATGTGGTTCTGCATTTGATTAGGAAAATAAATCCAACTATTTTTACTCATGCCATCTATGCTGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTCTGCTTTTTATGATATGTGTGACACCGTCATGCCCCGGGAAGACACATCAAGGATGATGATTGAGAGAGACATTGTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTCCCAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGGACCGGGAATTAATGGCCAACTTTAGGACTAAGTTAAGGGAATGGGGCCAGAGAGATTTTATCCTTGATGAAGACGATAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTGTATGCTTCCAGTTGTTGGGTGCCAGCATGA 1980 0.4364 MNPNFPGASNFMADPSLEDTDFLETVKFISQTLMEENIEQRPFYDPVTLQLTEKSFYDALKDNVPLSPGQHPSDSQSPDGNGTTSSSSSSSSANNFFLHENSSELTPPSQDTPVSVLGDHAFQLNSHVISRTPSQFPLDLDSSVSKLLAQNVITDTDSVSQFMRGLEEASKFLPLGPQLVTGLESKAEAPIMVGENSFGFKGRNNHEGRKNHEREESDTTEVGRSNKQSAVGDVDEDDLSDMFDRLMVSVESMPGEKPPSSDGWKDHPKRKGRKKGAVDLRNLLLLCSQALHANDNRAANELLLQIRQHSSPSGDGLQRLAHYLANGLEARLVGDADGTRAQVYYTSPSIKSITNVEFLKGYEIFLSTCPYKKFAFLFANKMIMKVAAKAETLHIIDFGILYGFQWPLLIKILLNRDGGPPKLRITGIEVPQPGFRPTEIIEDTGRRLADYCKRFNVPFEYNPIASRNWETIQIEDLKIESNELVVVNCMMRFKNLLEETIEGNSPRNVVLHLIRKINPTIFTHAIYAGSYNSPFFATRFREALFHYSAFYDMCDTVMPREDTSRMMIERDIVGREAMNVIACEGSQRVERPETYKQWQVRNTRAGFKQLPLDRELMANFRTKLREWGQRDFILDEDDNWMLQGWKGRILYASSCWVPA. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03855 659 MobiDBLite consensus disorder prediction 202 222 - -
Seca4g03855 659 MobiDBLite consensus disorder prediction 251 274 - -
Seca4g03855 659 MobiDBLite consensus disorder prediction 68 95 - -
Seca4g03855 659 MobiDBLite consensus disorder prediction 197 236 - -
Seca4g03855 659 MobiDBLite consensus disorder prediction 61 95 - -
Seca4g03855 659 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 207 652 IPR005202 -
Seca4g03855 659 Pfam GRAS domain family 280 656 IPR005202 -
Seca4g03855 659 ProSiteProfiles GRAS family profile. 271 657 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03855 Seca-Chr4 67797712 67799691 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03855 25 659 GRAS Transcription Factor Family AT1G07530 46.176 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03855 GRAS 5.9e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03855 - - gmx:100795855 824.313