Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03854 ATGGATCCTTATCTGGAAGACACTGACTTCTCAGAAACTGTCAAATTCATAAGCCAAACCCTGATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACTTGCTAAGCTTGCAAGTCACCGAGAAATCACTTTATGAAGCTCTCAAAGACAACATACCTCTTTCCCCCAGTCAACACCCCTCAGATATTCAGAGTAGAATCACCATCAGCGGCAACAGCAGCAGCTTCAACAACTTTGTACATGACAATTCTCGTGGGTTGACTCCTCCTTCTTTGGATACCCCTGTTTCTGTTCTTGGTGATCATGCTAGCAATGGAATGTTAGATTTAGATGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGACACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTCCCTCCAGGACCTCAGCTTGTGACTGGTCTTGAGTCAACCGAAGAAGCACCTGTTATGGTTGGGGAGAATTCATTTGGGTTGAAAGATAGAAAGAATCATGAGTTCATAAAGAATCATCAGCGTGAAGGTGATACCACTGAAATAGGGAAAAGTAACAAACAATCAGCAGTTGGTGTTGTTGACGAGGATGACTTATCAGATATGTTTGATCAATTGATGCTTAGTGTGGAAAGTGTGCCAGGTAAAAAGCCACCTTCATCTGATGGAGAGAAGGCTCATCCTAAGAGAAAAGGCAGGAAGAAGGAAGCAGTATATTTGAGGGATCTTCTGTTTCTATGTTCACGAGCTCTGCATGCTAATGACAACAGGACTGGAAATGAACTACTACAGCAGATTAGGCAGCGTTCCTCTCCCTTTGGGGATGGATCACAGAGGTTGGCTCATTACTTCACCAATGGCCTTGAGGCACGCTTGGTTGGTGATAGTACCTGCACACAAAGAGGTGGACCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAGCCTGGCTTTTGTCCAACAGAAATAGTTGTGGAGACTGGTCACCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACCATGCCATAGCATCACAGAACTGGGAATCCATTCAAGTTGAAGACCTTAAAATTAAGAGCAACGAGCTAGTTGCTGTGAACTGTATGATGAGGTTCAGGAATTTACTGGATGAGACTATTGAAGGGAACAGTCCAAGAAACGCAGTTCTGGATTTGATCAGGAAGCTAAATCCGGATATTTTTACTCAGTCCATCTACAATGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTATTATGCTCTTTATGATATGTGA 1335 0.4367 MDPYLEDTDFSETVKFISQTLMEENIEQRPFYDLLSLQVTEKSLYEALKDNIPLSPSQHPSDIQSRITISGNSSSFNNFVHDNSRGLTPPSLDTPVSVLGDHASNGMLDLDVSKLLAQNVISDTDSVSQFMRGLEEASKFLPPGPQLVTGLESTEEAPVMVGENSFGLKDRKNHEFIKNHQREGDTTEIGKSNKQSAVGVVDEDDLSDMFDQLMLSVESVPGKKPPSSDGEKAHPKRKGRKKEAVYLRDLLFLCSRALHANDNRTGNELLQQIRQRSSPFGDGSQRLAHYFTNGLEARLVGDSTCTQRGGPPKLRITGIEFPQPGFCPTEIVVETGHRLADYCKRFNVPFEYHAIASQNWESIQVEDLKIKSNELVAVNCMMRFRNLLDETIEGNSPRNAVLDLIRKLNPDIFTQSIYNGSYNSPFFATRFREALFHYYALYDM. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03854 444 ProSiteProfiles GRAS family profile. 238 444 IPR005202 -
Seca4g03854 444 MobiDBLite consensus disorder prediction 225 241 - -
Seca4g03854 444 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 195 301 IPR005202 -
Seca4g03854 444 MobiDBLite consensus disorder prediction 219 241 - -
Seca4g03854 444 Pfam GRAS domain family 247 301 IPR005202 -
Seca4g03854 444 Pfam GRAS domain family 307 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03854 Seca-Chr4 67793915 67795460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03854 6 444 GRAS Transcription Factor Family AT2G37650 33.512 9.73e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03854 GRAS 1.2e-35 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03854 - - jre:109013014 365.155