Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03853 ATGGTGTATGAGAGAGAGATTGTGGATCGGGAGGCTATGAATGTTATAGCATGTGAAGGCTTCGAGAGGGTTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATTCAAGGGCTGGTTTCAAGCAGCTCCCGCTGAACCAGGATTTAATGGCCAACTTTAGGACTAAGTTAAGGGAATGGTACCACAGAGATTTTGTCCCTGATGAAGTCTATGCTTCCACTTGTTGGGTCCCGGCATAA 246 0.4715 MVYEREIVDREAMNVIACEGFERVERPETYKQWQVRNSRAGFKQLPLNQDLMANFRTKLREWYHRDFVPDEVYASTCWVPA. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03853 81 Pfam GRAS domain family 2 68 IPR005202 -
Seca4g03853 81 ProSiteProfiles GRAS family profile. 1 81 IPR005202 -
Seca4g03853 81 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 78 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03853 Seca-Chr4 67793640 67793885 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03853 3 81 GRAS Transcription Factor Family AT1G07520 53.763 8.16e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03853 GRAS 4e-15 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03853 - - pvu:PHAVU_011G063200g 136.732