Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03848 ATGAATCCTAACTTCCCTGGCGCTAGCAATTTCATGGCTGATCCTTCTCTGGAAGACACTGACTTTTTAGAAACTGTCAAGTTCATAAGCCAAACCCTCATGGAAGAGAACATTGAACAGAGGCCCTTTTATGACCCAGTGACCTTGCAACTCACAGAGAAGTCATTTTACGATGCCCTCAAAGACAATGTCCCTCTTTCCCCTGGTCAACATCCCTCAGATAGTCAGAGCCCCGATGGAAATGGAACCACCAGCAGCAGTGGCAGTAGCAGCAGTGCCAACAACTTTTTTTTACATGAAAATTCTAGTGAGTTGACTCCCCCTTCTCAGGATACCCCTGTTTCTGTCCTTGGCGATCATGCTTTTCAGCTTAACTCCCATGTCATTTCTAGAACACCCTCTCAATTTCCTTTAGATTTGGATTCTTCTGTTTCCAAACTGTTGGCACAAAATGTTATCAGTGATACAGACTCTGTCTCCCAGTTTATGAGAGGCTTAGAGGAAGCTAGCAAGTTTCTTCCTCTAGGGCCTCAGCTTGTGACTGGTCTTGAGTCAAAGGAAGAAGCACCCATTATGGTTGGGGAGAATTCGTTTGGGTTTAAAGGTAGAAAGAATCATGAGCGCGAAGAAAGTGATGCCACTGAAGTAGGTAGAAGTAACAAGCAATCAGCAGTTGGTGATGTCGATGAGGATGACTTATCAGATATGTTTGATCGACTGATGGTTAGTGTGGAAAGTACGCCAGGTGAAAAGCCACCTTCGTCTGATGGATGGAAGGATCATCCTAAGAGAAAAGGCAGGAAGAAGGGAGCAGTAGATTTGAGGAATCTTCTGCTTCTATGTTCACAAGCTCTGCATGCCAATGACAACAGGGCTGCTAATGAACTACTACTGCAGATTAGGCAGCATTCTTCTCCCTCTGGGGATGGATTACAGAGGTTGGCTCATTACTTCGCCAATGGCCTTGAGGCCCGTTTGGTTGGTGATGCTGATGGTACCCGTGCACAAGTATATTATACCTCTCCGAGCATCAAGAGCATCACAAATGTGGAGTTTCTGAAAGGCTACGTACTTTTTCTATCTACTTGCCCATACAAGAAGTTTGCATTTTTCTTTGCAAATAAAATGATTATGAAAGTAGCTGCAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCATTACTTATTAAGTTTCTATCAAATACAGATGGTGGACCTCCCAAGCTGAGAATTACAGGTATAGAGGTTCCCCAACCTGGCTTTCGTCCAACAGAAATAATTGAGGACACTGGTCGTCGTCTGGCTGACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATCCTATAGCATCACGGAACTGGGAAACCATTCAAATTGAAGACCTGAAAATTGAGAGCAATGAGCTAGTTGTTGTGAACTGTATGATGAGGTTCAAGAATTTACAGGACGAGACTATTGAAGGGAACAGTCCTAGAAATGCGGTTCTGCATTTGATTAGGAAAGTAAATCCAACTATTTTTACTCATGCCATCTATGCTGGATCTTATAATTCCCCTTTCTTTGCCACACGGTTTAGGGAGGCTCTGTTCCATTTTTCTGCTTTTTATGATATGTGTGACACCGTCATGCCCCGGGAAGACACATCAAGGATGATGATTGAGAGAGACATTACGGGTCGGGGGGCTATGAATGTTATAGCATGTGAAGGTTCCCAGAGGGTTGAGAGGCCTGAAACATACAAACAGTGGCAGGTTAGGAATACGAGGGCTGGTTTCAAGCAGCTCCCACTGGACCAGGAATTAATGGCCAACTTTAGGACTAAGTTAAGGGACTGGGGCCAGAGAGATTTTATGCTTGATGAAGACCATAACTGGATGCTTCAAGGTTGGAAGGGTCGCATTTTTTTTGAGTATTGCTTACGAACATTTGGCGGTTACTTGAGATTTTTCAGCATGTATGTTGCAATGTTAAACGTAAGCAAACTTTACATGGTTATTAAACCAAAGTTTGCAAGACCTAGAAAGATTCCTGTCACCGCATGTGATGGTAAATGCATTGGTGGTGGTATAGGAGATGGTTCTATACAGAACAAGACCTGGCTTGGGTGGACGAGTTTGTGCAGGTCAAGGAAGCTTATTGACCTAGTATCTTCTAAAGCAAGGAGATATGATCCAAGGGAGGCTATCCTAAAATACGCTGAGGTTGCAGCAATGGATCCTAAGTTCATTGCTTCATCATATGCAGAAACCCAACCTATGACAGTGTTTTCAAAGTCAGATCGATTCTGA 2316 0.4339 MNPNFPGASNFMADPSLEDTDFLETVKFISQTLMEENIEQRPFYDPVTLQLTEKSFYDALKDNVPLSPGQHPSDSQSPDGNGTTSSSGSSSSANNFFLHENSSELTPPSQDTPVSVLGDHAFQLNSHVISRTPSQFPLDLDSSVSKLLAQNVISDTDSVSQFMRGLEEASKFLPLGPQLVTGLESKEEAPIMVGENSFGFKGRKNHEREESDATEVGRSNKQSAVGDVDEDDLSDMFDRLMVSVESTPGEKPPSSDGWKDHPKRKGRKKGAVDLRNLLLLCSQALHANDNRAANELLLQIRQHSSPSGDGLQRLAHYFANGLEARLVGDADGTRAQVYYTSPSIKSITNVEFLKGYVLFLSTCPYKKFAFFFANKMIMKVAAKAETLHIIDFGILYGFQWPLLIKFLSNTDGGPPKLRITGIEVPQPGFRPTEIIEDTGRRLADYCKRFNVPFEYNPIASRNWETIQIEDLKIESNELVVVNCMMRFKNLQDETIEGNSPRNAVLHLIRKVNPTIFTHAIYAGSYNSPFFATRFREALFHFSAFYDMCDTVMPREDTSRMMIERDITGRGAMNVIACEGSQRVERPETYKQWQVRNTRAGFKQLPLDQELMANFRTKLRDWGQRDFMLDEDHNWMLQGWKGRIFFEYCLRTFGGYLRFFSMYVAMLNVSKLYMVIKPKFARPRKIPVTACDGKCIGGGIGDGSIQNKTWLGWTSLCRSRKLIDLVSSKARRYDPREAILKYAEVAAMDPKFIASSYAETQPMTVFSKSDRF. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03848 771 MobiDBLite consensus disorder prediction 197 230 - -
Seca4g03848 771 ProSiteProfiles GRAS family profile. 265 651 IPR005202 -
Seca4g03848 771 MobiDBLite consensus disorder prediction 200 216 - -
Seca4g03848 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 205 640 IPR005202 -
Seca4g03848 771 MobiDBLite consensus disorder prediction 68 95 - -
Seca4g03848 771 Pfam GRAS domain family 274 645 IPR005202 -
Seca4g03848 771 MobiDBLite consensus disorder prediction 61 95 - -
Seca4g03848 771 MobiDBLite consensus disorder prediction 244 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03848 Seca-Chr4 67734195 67739437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03848 25 649 GRAS Transcription Factor Family AT1G07530 44.848 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03848 GRAS 1.3e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03848 - - gmx:100795855 805.053