Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03847 ATGGATCCTAACATTCCAGCAGCTAACGATTCCAAGAACATGTACCAGTTTGGTGAAGAAGGAAGCATTCTAGTCTCTGATCCAAATCAGTACTCAACAGACTGGTATATGTACCAACAATATGGGAGCTTCCTTGATGTGGACCCAACTGGTTTAGCTGTGCATACAAACCCTATAGAGGGTCAAGAAGACACCGACTTCTCAGAAACTGTCAAGTTCATCAGCCAAATCCTGATGGATGAGAACTTTGAACAGACGCCGTTTGATGACTCACTGAGTTTACAAGTCACTGAGAAATCATTCTATGATGCTCTCGTAGACAACATACATCTTTCTCCCATTCAACACCCTTTAGATATTTCGAGCTCCAACAGTGGATCCACCAGCAGCACCAATGTCTCACATGACAATTTCCAGGAGTTGAAGCCCCCTTCTCCTGATACTCATGTTTCTGCTCTTCGTGATCATGCTTTTCAGTTTAACTCCCATGCCATTTCTCACACTCCCTCCCAACCTCCTTCCACTAGTGTTAGTGACAGACTATTAGATTTGGATTCTTCTGTTACCAAACTGTTAGCACAAAATATTTTCAGTGATGCAGATTATGTCTCCCAATTCAAGAGAGGGTTGGAGGAAGCTAGCAAGTTTCTTCCTCAAGAACCTTGGCTTGTGACTGGTCTAGAGTCAGAGGGAGAATCATCCAATATGGTTGGGGAGAATTCGTTTAGGTTGAAGGGTAGAAAGAATCATCAGCGTGAAGAAAGTGATACTAAGGAAGAAGGGAGAAATAACAAGCTATCAGCAGTAGGCGTTGTTGGTGAGGGTGATTTATCAGATATGTTTGATCAAGTCTTGCTTAGTGTGGAACTTTTGTCACTGTATAGTGAACCCGATTGCTTGCAGAATGAACCAGTTAAAGCAAAGCAGCCAGGTGAAAAGCCACCTTCATCAGATATGAGGACTGCTAATGAAACAGTAGATATGAGGACTCTTCTGCTTCTATGTTCTCAAGCTGTGTATGCTAATGATAACAGGACTGCTAATGAACTACTAATACAGATTAGACAGCATTCTTCTCCCTCTGGGGATGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGTTGGCGATAGTTCTGGGGCGCAAGTATTCTTTTCCTCTCCAATCTCCAAGAGGTTCACTGCTGCTGATTTTGTGAAAGCTTACAAAGTTCTCCCAACTGGTATCCCATTCAATAAGTTTGTATATTCCTTTGCAAATACAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCCTTCATATCATTGATTTTGGTATCCTATATGGTTTCCATTGGCCAGTACTTATTAAGTTTCTATCAAATAGAGACCGTGGACCTCACAAGCTAAGGATCACAGGGATAGATTTTCCCCTACCTGGCTTTCGTCCTACAGAAAGAATTGAGGAGACTGGTCGTCGTCTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATTTCATAGCATCAGGGAACTGGGAAACCATTCAAGTTGAAGACCTTAAAATTGAGAGCAATGAGGTAGTTGCTGTGAACTGTCTGGTGAGGTTCAAGAATTTACTGGATGAGTCCATTGAGGTGAATTGTCCTAGAAATACAGTTCTGCATTTGATCAGGAAGATAAATCCAGATATTTTTGTTCAGTCCATTGATAATGGATGTTATAATATCCCTTTCTTTGTCACACGGTTTAGGGAGGCTCTGTTCCATTTTTCTGCTTTTTATGATATGTTTGACACTGTCATGCCCCGTGAAAATGAATGGAGGATGATAATTGAGAGAGAGATTTTGGGTCGGGAGGTTATGAATATTATAGCATGTGAAGGTTTCGAGAGGATTGAGAGGCCTGAGACATACAAACAGTGGCAGGTTAGGAATACTAGGGCTGGTTTCAAGCAGCTCCCACTGAACCAAGAATTGATGGCTAACTTTAGGACTAAGTTAAGGGAAAGGTACCACAGAGATTTTGTCTGTGATGAAGCCAACAACTGGATGCTCCAAGGTTGGAAGGGCCGCATATTGTATGCTTCCACTTGTTGGGTGCCGGCATAA 2118 0.4235 MDPNIPAANDSKNMYQFGEEGSILVSDPNQYSTDWYMYQQYGSFLDVDPTGLAVHTNPIEGQEDTDFSETVKFISQILMDENFEQTPFDDSLSLQVTEKSFYDALVDNIHLSPIQHPLDISSSNSGSTSSTNVSHDNFQELKPPSPDTHVSALRDHAFQFNSHAISHTPSQPPSTSVSDRLLDLDSSVTKLLAQNIFSDADYVSQFKRGLEEASKFLPQEPWLVTGLESEGESSNMVGENSFRLKGRKNHQREESDTKEEGRNNKLSAVGVVGEGDLSDMFDQVLLSVELLSLYSEPDCLQNEPVKAKQPGEKPPSSDMRTANETVDMRTLLLLCSQAVYANDNRTANELLIQIRQHSSPSGDASQRLAHYFANGLEARLVGDSSGAQVFFSSPISKRFTAADFVKAYKVLPTGIPFNKFVYSFANTMIMKAAAKAETLHIIDFGILYGFHWPVLIKFLSNRDRGPHKLRITGIDFPLPGFRPTERIEETGRRLANYCKRFNVPFEYNFIASGNWETIQVEDLKIESNEVVAVNCLVRFKNLLDESIEVNCPRNTVLHLIRKINPDIFVQSIDNGCYNIPFFVTRFREALFHFSAFYDMFDTVMPRENEWRMIIEREILGREVMNIIACEGFERIERPETYKQWQVRNTRAGFKQLPLNQELMANFRTKLRERYHRDFVCDEANNWMLQGWKGRILYASTCWVPA. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03847 705 MobiDBLite consensus disorder prediction 227 267 - -
Seca4g03847 705 Pfam GRAS domain family 329 702 IPR005202 -
Seca4g03847 705 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 263 698 IPR005202 -
Seca4g03847 705 MobiDBLite consensus disorder prediction 120 141 - -
Seca4g03847 705 MobiDBLite consensus disorder prediction 120 148 - -
Seca4g03847 705 MobiDBLite consensus disorder prediction 302 322 - -
Seca4g03847 705 ProSiteProfiles GRAS family profile. 319 703 IPR005202 -
Seca4g03847 705 MobiDBLite consensus disorder prediction 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03847 Seca-Chr4 67698820 67701834 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03847 70 705 GRAS Transcription Factor Family AT1G07530 46.143 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03847 GRAS 5e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03847 - - lja:Lj0g3v0300259.1 860.907