Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03845 ATGGATCCTAACTTTCCAGGAGCTAATGGTTCCATGAACACCTACCAGTTTGGTGAAGAAGAGAGCATACTGGTCTCGAATCCAAATCAGTACTCAACAGACTGGGATATGTACCAACAATATGGGAGCTTCCTTGATATGGACCCAATTGGTTTTGCTGTGCATACAAGCCCTATAGAGGGTCAAGGTGCGTCTGGGGCAACCATGTCCATGACCTCAGTGATGGATCCTTCTCTGGAAGACACTGACTTCTCAGAAACTGTCAAGTTCATGAGCCAAATCCTGATGGATGAGAACTTTGAACCAAGGCTGTTTGATGACTCACTGAGCTTACAAGTCATCGAGAAATCATTCTGTGATGCTCTCGAAGACAACATACATCTTTCCCCCATTCGACACCCCTTGGATATTCAGAGCTCCAATGGTGGAACCACCAACAATGCCTATGTTTTACATGACAATTTTCAGGTTTTGAAGCCCCCTTCTCCTCATGTTCCTGCTCTTCATGATCATGCTTTTCAGTTTAACTCCCACAGACTATTAGATTTGGATTCTTCTGTTACCAAACTGTTAGCACAAAATATTTTCAGTGATGCAGATTATATCTCCCAATTTAAGAGAGGGTTGGAGGAAGCTAGTAAGTTTCTTCCTCCAGGACCTAGGCTTGTGACTGGTCTAGAGTCTGAGGGAGAACCATCCAATATGGTTGGGGAGAATTCGTTTGGGTTGAAGGGTAAAAAGAATCATCAGCGCGAAGAAAGTGATACTAAGGAAGAAGGGAGAAGTAACAAGCAATCAGCAGTAGGCGTTGTTGATGAGGGTGATTTATCAGATATGTTTGATCAAGCTTTGCTTAGTGTGGAACATCTGTCACTGTATAGTGAACACGATTGCTTGCAGAAGGAACCAGTGAAAGCAGAGCATCCACGTGAAAAGCCACCTTCATCTGATGGAAGGAAGGCCCATTCTAAGGAACACGGCCGGAAGGAGGAAACAGTAGATTTGAGGACTCTTCTGCTTCTATGTTCACAAGCTGTGTATACCAGTGACAATAGGACTGCTAATGAAATACTAAAGCAGATTAGGCAGCATTCTTCCCCCTTTGGGGATGCATCACAGAGGTTGGCTCATTACTTCGCCAATGGCCTGGAGGCACGCTTGGCTGGTGATAGTTCTGGTGCACAAATATTTTATTCCTCTCTGAGCTCTAAGAGGATCACTGCTGCTGAGTTTGTGAAAGCTTACCATGTTTTTCCATCTGCTGCCCCGTTCAAGAAGTTTGCATATTCCTTTGCAAATACAATGATTATGAAAGCAGCTGCAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCTATATGGTTTCCAGTGGCCAATACTTATTAAGTTTCTATCAAATAGAGATGGTGGACCTCACAAGCTGAGGATCACAGGGATAGAATTCCCCCAACCTGGCTTTCGTCCCACAGAGAGAATTGAGGAGACTGGTCGTCGTCTGGCTAACTATTGCAAGCGTTTCAATGTTCCCTTTGAGTACAATCCTATAGCATCACGGAATTGGGAAACCATTCAAGTTGAAGACCTTAAAATTAAGAGCAAGGAGCTAGTTGCTGTGAACTGTGTGATGAGGTTCAAGAATTTACCGGATGAGACCATTGAAGTGAATAGTCCTAGAGATGCAGTTCTGCATTTGATCAGGAAGATAAATCCAGATATTTATGTTCAATGCATCGATAATGGATCTTACAACATCCCTTTCTTTGTCCCACGGTTTAGGGAGGCTCTGTTCCATTTTTCTGCTTTTTATGATATGTTTGACACTGTCATGCCCCGTGAAAACGAATGGAGGATGATAATTGAGAGAGAGATTTTGGGTCGGGAGGCTATGAATGTTATAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCTCAGACATACAAACAGTGGCAGGTTAGGAATACTAGAGCTGGTTTCAAGCAGCTACCACTGAACCAGGAATTAATGGTCAATTTGAGGACTAAGTTAAGGGAAAGGTACCACAGAGATTTTGTCCTTGATGAAGACAACAACTGGACGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCTTCCACTTGCTGGGTGCCGGCATAA 2139 0.4357 MDPNFPGANGSMNTYQFGEEESILVSNPNQYSTDWDMYQQYGSFLDMDPIGFAVHTSPIEGQGASGATMSMTSVMDPSLEDTDFSETVKFMSQILMDENFEPRLFDDSLSLQVIEKSFCDALEDNIHLSPIRHPLDIQSSNGGTTNNAYVLHDNFQVLKPPSPHVPALHDHAFQFNSHRLLDLDSSVTKLLAQNIFSDADYISQFKRGLEEASKFLPPGPRLVTGLESEGEPSNMVGENSFGLKGKKNHQREESDTKEEGRSNKQSAVGVVDEGDLSDMFDQALLSVEHLSLYSEHDCLQKEPVKAEHPREKPPSSDGRKAHSKEHGRKEETVDLRTLLLLCSQAVYTSDNRTANEILKQIRQHSSPFGDASQRLAHYFANGLEARLAGDSSGAQIFYSSLSSKRITAAEFVKAYHVFPSAAPFKKFAYSFANTMIMKAAAKAETLHIIDFGILYGFQWPILIKFLSNRDGGPHKLRITGIEFPQPGFRPTERIEETGRRLANYCKRFNVPFEYNPIASRNWETIQVEDLKIKSKELVAVNCVMRFKNLPDETIEVNSPRDAVLHLIRKINPDIYVQCIDNGSYNIPFFVPRFREALFHFSAFYDMFDTVMPRENEWRMIIEREILGREAMNVIACEGFERVERPQTYKQWQVRNTRAGFKQLPLNQELMVNLRTKLRERYHRDFVLDEDNNWTLQGWKGRILYASTCWVPA. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03845 712 MobiDBLite consensus disorder prediction 244 262 - -
Seca4g03845 712 ProSiteProfiles GRAS family profile. 326 710 IPR005202 -
Seca4g03845 712 MobiDBLite consensus disorder prediction 302 330 - -
Seca4g03845 712 MobiDBLite consensus disorder prediction 221 272 - -
Seca4g03845 712 Pfam GRAS domain family 335 709 IPR005202 -
Seca4g03845 712 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 286 705 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03845 Seca-Chr4 67679680 67681866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03845 87 712 GRAS Transcription Factor Family AT1G07530 47.399 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03845 GRAS 1.7e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03845 - - lja:Lj0g3v0300259.1 900.968