Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03835 ATGCTCTCTACGGATTCCCTTCTGGAAAATTTTGCTGGTTCCGCGAATGGATGCTTATTTGCAAAGGGTCCTATCTCGGTATTTTCCAACCAGAACCCAGGAAATGGGTTCAAGTTGAAAGATTCATCATCATCCCCTTCAAACCATTCAGAATCTGTCTGTGATTCTGGTATTACTTCTGGCACAAGCTCAAATGGAGAATCTTCAGAGTCAGAGAGTAGTAAGTATTCCAATCCCATTCTCAGATACATAAGCGACATCCTCATGGATGAAGAAGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGATTGTTTGAGACTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTGGGTCGTAGCTATCCTTCATCACCCCACCAAATCGATGGTTGTTACCGTGATGATAACCCTTGCCCAGATGATAATTTTGGTGGAAGAACTACTAGTTCTGAGAGCTATAGCAGTTATACCACTGATAATTCATATGAGTCTGAATGGGTTAACGGTGCTGGTGATTTTGAGTCTTCTTTCCTGCAAAGATCTCTAGTTGAGTCCCCAGAAAACACCTATGAGTTTCTGGATGGAGTATTACCTCCTGATCCATTTAGACAGACAAAAGCTGGTATCCATTTTTCAAATGGAAACTGGAATATGATTCACTCTCAGAGAAAGCTACATATGATTGAAGAGGCTCTGATGAAGGGTTCCACAGCAGCCAGAGGGTCAAGGGAAAAAAGAGGCCATCTTTTGAATGATATCTCACATGAAGAAGAAGAAGAAGAAGAGAGAAGCAGCAAGCTTTCAGCTGTTTACTCTGATGATTCAGAGCCATCAGACATGTTTGATGAGGTACTGCTTTGTAGGGATGGTAAAAGTCCAGCCATTTTTTGTATTAATCGTGAATCATCATCTCAGATTGCTGATCCAGGAGGATCTAATGGAAAGACAACACGTTCTAAGAAAGGTTCCAACAAAGGGACAAATACTAGTACACCAGTAGATTTATGGACTCTGCTTACCCAATGTGCACAGGCTGTGGCTAGTTATGATCAAAGGACTGCAAATGAAACACTCAAGCAGATTAGGCAGTACTCTTCACCACTTGGTGATGGAATCCAGCGTTTGGCTAGTTACTTTGCTGATGGGCTTGAGGCACGATTAGCTGCTGGTACACCAAAGTATAAGCTCCTTCAATCTGCATCTGCTGCAGATATGTTGAAAGCTTACAAAGTGTACATCACAGCATCTCCATTTCCAAGGATGTCAAATTTCTTGGCTAACAGAACAATTCTAAAACAAGTACAAAATGAAAGCAGTCTTCATATTATTGACTTTGGGATTTTCTATGGTTTCCAATGGCCTTGCCTCATCCAACGTCTTTCAGAAAGACCAGGTGGACCTCCAAGGCTTCGTATTACAGGAATTGATCTTCCTCAGCCTGGATTTAGGCCTGCAGAAAGGGTCGAGGAGACAGGGCGGCGACTTGAGAAGTACTGCAAGAGATTTGGAGTTCCATTTGAGTACAATTGCCTTGCACAGAAATGGGATACTATAAGACTTGAAGACCTCAAAATTAATAGAGAAGAAGTGACTGTGGTGAACTGTTTGTATAGATTGAAGAACCTATCTGATGAAACTGTGACTGCAAACTGTCCAAGAGATGCTGTGTTAAGGTTGATCAGGAGGATTAATCCAAAAATATTCATACATGGTGTTGTCAATGGCACTTACAATGCACCATTTTTCCTGACTCGGTTTAGGGAGGCACTCTTCCACTTCTCATCATTGTTTGATATGTTTGAGGCTACTGTGCCTCGTGAAGATACATCTAGGTTGATGTTTGAGAAAGGGTTATTTGGAAGGGATGCAATCAATGTCATAGCATGTGAAGGGGCAGAGAGGGTTGAAAGGCCAGAGACTTACAAGCAGTGGCAGGTTAGGAACAGGAGAGCAGGGTTCAAGCAACTTCCATTGGCCCCAGAACTCTTGAATAGAGTGAAAGAAATGGTGAAGGAGGAATATCATAAAGATTTTGTAGTGGATGAGGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTCTCCATGCTGTTTCTTCTTGGGTTCCTGCTTAA 2124 0.4242 MLSTDSLLENFAGSANGCLFAKGPISVFSNQNPGNGFKLKDSSSSPSNHSESVCDSGITSGTSSNGESSESESSKYSNPILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPSSPHQIDGCYRDDNPCPDDNFGGRTTSSESYSSYTTDNSYESEWVNGAGDFESSFLQRSLVESPENTYEFLDGVLPPDPFRQTKAGIHFSNGNWNMIHSQRKLHMIEEALMKGSTAARGSREKRGHLLNDISHEEEEEEERSSKLSAVYSDDSEPSDMFDEVLLCRDGKSPAIFCINRESSSQIADPGGSNGKTTRSKKGSNKGTNTSTPVDLWTLLTQCAQAVASYDQRTANETLKQIRQYSSPLGDGIQRLASYFADGLEARLAAGTPKYKLLQSASAADMLKAYKVYITASPFPRMSNFLANRTILKQVQNESSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQPGFRPAERVEETGRRLEKYCKRFGVPFEYNCLAQKWDTIRLEDLKINREEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRRINPKIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDMFEATVPREDTSRLMFEKGLFGRDAINVIACEGAERVERPETYKQWQVRNRRAGFKQLPLAPELLNRVKEMVKEEYHKDFVVDEDGKWVLQGWKGRILHAVSSWVPA. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03835 707 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 262 698 IPR005202 -
Seca4g03835 707 MobiDBLite consensus disorder prediction 307 332 - -
Seca4g03835 707 MobiDBLite consensus disorder prediction 144 159 - -
Seca4g03835 707 ProSiteProfiles GRAS family profile. 328 705 IPR005202 -
Seca4g03835 707 Pfam GRAS domain family 339 704 IPR005202 -
Seca4g03835 707 MobiDBLite consensus disorder prediction 238 278 - -
Seca4g03835 707 MobiDBLite consensus disorder prediction 241 271 - -
Seca4g03835 707 MobiDBLite consensus disorder prediction 37 75 - -
Seca4g03835 707 MobiDBLite consensus disorder prediction 130 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03835 Seca-Chr4 67540603 67542726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03835 71 706 GRAS Transcription Factor Family AT2G29060 46.237 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03835 GRAS 7.3e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03835 - - lja:Lj3g3v3213190.1 1089.33