Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03822 ATGAATTTTGTTTTCCGAGGAAGTAGGGGGGATATTGAAAGCGGATTTGCAGAATATGTTCCTGAAAGAACCTCAGTGCGGGTTCATCCATCCCGGCCAGTTAATAGCAATTCTCTAGCTTTTCTTATTACAGTTATTTTGATATTCATGATTTTAAACTCTCCTCAGATGTTACATTACTTTTTGCTCTGGATTGTACTGGCTGTCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCATCAGCTTCAGGAACAGGTCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCATGGCCATACTGAATTATGGCTTCACATGCCACCATCAATTGCAATTGCAACTAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTTCACTTCTTGACCGTGAATTTGATGCATTAGATTATGACACTTTGAGAGCTCTGGACTCTGATAGTGCTTCTAGTACTCATTCAATGACTGAGGAAGAGATAAATGCCTTGCCTATTCACACCTATAAAGTTCCAGACCCAACAAAAGATGGCTCAGCTGGTTTTGCGTCCTCTTCTTCAAGTGCAGCTGAGATTAAACATGGCTCCGGTGGAACAGATGGTAGTATCACAGGTCCAGAAGATGAGCTGACATGTACTATATGCTTGGAGCAAGTTAAGAGGGGGGAGCTTGTACGCAGCTTGCCATGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTCCGGCGACAAGGAACATGGTCCTGTTTGCAAATTTAG 768 0.4414 MNFVFRGSRGDIESGFAEYVPERTSVRVHPSRPVNSNSLAFLITVILIFMILNSPQMLHYFLLWIVLAVFVMATSLRMYATCHQLQEQVRAHAAAASGLHGHTELWLHMPPSIAIATRGRLQGLRLQLSLLDREFDALDYDTLRALDSDSASSTHSMTEEEINALPIHTYKVPDPTKDGSAGFASSSSSAAEIKHGSGGTDGSITGPEDELTCTICLEQVKRGELVRSLPCLHQFHANCIDPWLRRQGTWSCLQI. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03822 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 252 IPR013083 -
Seca4g03822 255 Pfam Ring finger domain 212 252 IPR001841 -
Seca4g03822 255 MobiDBLite consensus disorder prediction 180 194 - -
Seca4g03822 255 SMART ring_2 213 255 IPR001841 -
Seca4g03822 255 CDD RING-H2_PA-TM-RING 212 249 - -
Seca4g03822 255 ProSiteProfiles Zinc finger RING-type profile. 213 252 IPR001841 -
Seca4g03822 255 MobiDBLite consensus disorder prediction 176 205 - -
Seca4g03822 255 PANTHER TARGET OF ERK KINASE MPK-1 2 249 - -
Seca4g03822 255 SUPERFAMILY RING/U-box 208 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03822 Seca-Chr4 67402169 67405132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03822 1 249 C3H Transcription Factor Family AT3G55530 69.600 6.77e-115 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03822 K16283 - gmx:100805406 392.504