Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03821 ATGAATTCGGATACGCAACCCGGAACGGCGTCGTACTGGTGCTACAGCTGCACCCGCTTTGTTCACATCTTGGGCCACGGCAACATCGTGTGCCCTAACTGTGAAAGCGGCTTCGTTGAACAGATCCACGCCGACCAATCACCGCGCCACCCTCATAGTCCCTTCCCCGACGACCTCATCTCTTCGAGGAGAACCCTGTCATCGTTCTCCGTGGACCCGGGGAAGACGGCGCCGATCACGACGGAGGGAGTGCCTTCGAGTTGTACTACGATGACGGTGATGGCTCTGGCCTCCGCCCCCTGCCGCCGACAGTGTCGGAGTTTCTCCTGGGGTCGGGATTCGATCGGTTGCTGGAGCAGTTTGCGCAGAGAGAACCCGCCCGCGTCAAAGGCGGCGATCGAGTCGATGCCGACGGTTGAGATCGGCGAGGCGCAGGTGGTTACCGAAGCGCACTGTGCGGTTTGCAAAGAAGCGTTTGAGCTTGGCACGGAGGCGCGTGAGTTACCCTGTAAGCACATTTACCATTCCGATTGCATTCTTCCATGGCTTTCGATGCGGAACTCGTGCCCCGTGTGCCGCCACGAACTTCCTTCGGATCAGAACCCTTTGGAGAGCAGGGTATCGGGTCAAATCGACGAAGAAGCGATTGGGTTAACGATATGGAGGTTGCCCGGTGGGGGATTCGCTGTCGGGAGGTTTTCCGGCGGAAGGAGAGCCGGAGAGAGCCATTTTCCGGTTGTGTACACAGAGATGGATGGTGGGCTTAATGCAAACGGAGCTCCCAGAAGAATTTCTCGGTCTGTGAGAAGCCATAGGGTTAGGGAAAGTCGTGGATTTGGCAGAGTTTTTCGCAATTTCTTGTCATTCTTTGGAAGACTTGGTTCTAGGTCCACTTCTTCTTCCTCCTCCTCCTCTTTGTCATCTTCGTATTCTGGTTCTGAGAATGTGTCGGTGAGTAGAAGCCGTAGCCAAGTGAATTCATTGTTCAATAGAAACTCGCGGAGACGAAGCAGGGCTTGGTTCTTGGAAGATTGA 1035 0.5536 MNSDTQPGTASYWCYSCTRFVHILGHGNIVCPNCESGFVEQIHADQSPRHPHSPFPDDLISSRRTLSSFSVDPGKTAPITTEGVPSSCTTMTVMALASAPCRRQCRSFSWGRDSIGCWSSLRRENPPASKAAIESMPTVEIGEAQVVTEAHCAVCKEAFELGTEARELPCKHIYHSDCILPWLSMRNSCPVCRHELPSDQNPLESRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGLNANGAPRRISRSVRSHRVRESRGFGRVFRNFLSFFGRLGSRSTSSSSSSSLSSSYSGSENVSVSRSRSQVNSLFNRNSRRRSRAWFLED. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03821 344 Pfam Ring finger domain 151 193 IPR001841 -
Seca4g03821 344 ProSiteProfiles Zinc finger RING-type profile. 152 193 IPR001841 -
Seca4g03821 344 CDD RING-H2_RNF126-like 152 193 - -
Seca4g03821 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 199 IPR013083 -
Seca4g03821 344 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Seca4g03821 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 70 197 - -
Seca4g03821 344 MobiDBLite consensus disorder prediction 294 314 - -
Seca4g03821 344 SUPERFAMILY RING/U-box 132 199 - -
Seca4g03821 344 Pfam Protein of unknown function (DUF1117) 216 333 IPR010543 -
Seca4g03821 344 SMART ring_2 152 192 IPR001841 -
Seca4g03821 344 FunFam E3 ubiquitin-protein ligase RING1-like 118 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03821 Seca-Chr4 67393229 67394341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03821 122 204 C3H Transcription Factor Family AT5G01980 51.807 4.49e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03821 K11982 - lja:Lj2g3v1472950.1 414.075