Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03819 ATGGGGGAAGAAGTGAAGCCAGATGAAGAGCGTGTCACCGACTGGGAGAAGGGTCTCCCAAGCACACACGATCTCACTCCCCTCTCTCAGCCTTTGATCCCGCCGGAGCTTGCATCGGCCTTCAGTATCTCGCCGGAGCCCCGCCGCACCCTCCTCGACGTCAACCGCGCCTCCAAGAACACCCTCTCCATTCTTCGTGGCGGTGGAAACGCTCACCAGGCGTTCTCCTCCTCCAACAACAACAACCACAACAACCTCGACGACGACGAGGACGAGGAGGGCGAAGAGGACATCGATCGGGACGGGTCGGGTTCCGATTCCCGGAAACAGAGGAAGATCGATTGTACGGAGGAAGCCGATTCGGCGGTTCGGACGGAGACGACCCTGAAACGACCTCGTTTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTGGACGTTGTGGCGCACCTTGGGATCAAGAACGCGGTGCCGAAAACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGTGAGAACGTGGCGAGTCACCTTCAGAAGTATCGTCTTTACTTGAAGAGGATGCAAGGTCTCTCCAACGAAGGTCCTTCTTCCTCTGATCATCTTTTTGCTTCCACCCCTGTCCCTCAAAGTTTGCATGACTCTGCTGCTGCTGCTTCTCATTCCCATTCCCATTCCCAATCCCATGGCCATACCAATTCCCATCTTCCTGTTCCCATTCCCATGCCTTATCCTCCACATCCTATGATGTCCATGCCCCTCCTTGGCATGCCACACCCCCATGGCCATATGGGTATGCCCCTCGCTTCTTCCTCTGCTACCTCCTCTTATCACTCTCATCCCTTTAACATGTTGCACCAGAGGGATTGGCCTCACCCTCCTCACCTTGCTCCTAATGATAATAAATGA 912 0.5548 MGEEVKPDEERVTDWEKGLPSTHDLTPLSQPLIPPELASAFSISPEPRRTLLDVNRASKNTLSILRGGGNAHQAFSSSNNNNHNNLDDDEDEEGEEDIDRDGSGSDSRKQRKIDCTEEADSAVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDHLFASTPVPQSLHDSAAAASHSHSHSQSHGHTNSHLPVPIPMPYPPHPMMSMPLLGMPHPHGHMGMPLASSSATSSYHSHPFNMLHQRDWPHPPHLAPNDNK. 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03819 303 MobiDBLite consensus disorder prediction 213 241 - -
Seca4g03819 303 MobiDBLite consensus disorder prediction 1 32 - -
Seca4g03819 303 MobiDBLite consensus disorder prediction 68 83 - -
Seca4g03819 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 187 IPR017930 -
Seca4g03819 303 MobiDBLite consensus disorder prediction 101 124 - -
Seca4g03819 303 MobiDBLite consensus disorder prediction 86 100 - -
Seca4g03819 303 Gene3D - 127 190 - -
Seca4g03819 303 MobiDBLite consensus disorder prediction 68 124 - -
Seca4g03819 303 Pfam Myb-like DNA-binding domain 135 183 IPR001005 -
Seca4g03819 303 MobiDBLite consensus disorder prediction 213 235 - -
Seca4g03819 303 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 10 277 IPR044841 GO:0003700|GO:0006355
Seca4g03819 303 SUPERFAMILY Homeodomain-like 128 188 IPR009057 -
Seca4g03819 303 MobiDBLite consensus disorder prediction 1 18 - -
Seca4g03819 303 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Seca4g03819 303 FunFam Two-component response regulator 127 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03819 Seca-Chr4 67315187 67316098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03819 1 267 G2-like Transcription Factor Family AT3G46640 54.915 9.49e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g03819 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03819 - - aprc:113858844 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03819 4 67315187 67316098 Seca4g03819 4 67315187 67316098 ECH