Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03811 ATGGAGTCTGATCATGATCAAGGTGATGAGCAATTAGGTGCAAGCCAGGTGACCCCAAGGTCCTATGAGTGCAACTTCTGCAAGAGGGGCTTCTCTAATGCACAAGCACTGGGAGGGCATATGAACATCCACAGGAAAGACAAAGCCAAACTCAAGCAACAATCTTCTTCTTCTTCTTCTTCTTCAAACCAAACAACTCATCAATCATCTTTGGACATTGATCATCATCACAAGTCTAGTAGTGAATTAATAAACTGGAATTGGAATGTGTCTCAACAAGACCATGCCTCCTCCAGAGATGAAATTCACATGAGGCAGCTTCCACTCTTTGCCGAATCACCAACTACCACTGAATTAATAATAACGGAAAAGCCACAAGCTGAAGGGGCTTTGATATCTGATCACCAAGGTGATGGTTCTTCAATGGAGTTAGACCTGGAATTAAGACTAGGGCCTGAGCCACAGGATTCATCAGCGCCAACAACGGGTACCAGAAAATTCTTTTGA 507 0.4359 MESDHDQGDEQLGASQVTPRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSSSSSSSNQTTHQSSLDIDHHHKSSSELINWNWNVSQQDHASSRDEIHMRQLPLFAESPTTTELIITEKPQAEGALISDHQGDGSSMELDLELRLGPEPQDSSAPTTGTRKFF. 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03811 168 MobiDBLite consensus disorder prediction 53 69 - -
Seca4g03811 168 Pfam C2H2-type zinc finger 22 46 - -
Seca4g03811 168 MobiDBLite consensus disorder prediction 38 78 - -
Seca4g03811 168 SUPERFAMILY beta-beta-alpha zinc fingers 19 49 IPR036236 -
Seca4g03811 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Seca4g03811 168 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
Seca4g03811 168 Gene3D Classic Zinc Finger 12 82 - -
Seca4g03811 168 PANTHER OS07G0101800 PROTEIN 10 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03811 Seca-Chr4 67214942 67215448 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03811 13 154 C2H2 Transcription Factor Family AT5G06070 32.768 9.92e-19 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g03811 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03811 - - gmx:102667172 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03811 4 67214942 67215448 Seca4g03811 4 67214942 67215448 ECH