Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03806 ATGGAACATGAGAAAGCCCCAATCTTGGAGGAAGCTAGGTCCAAGCAGGAAATTGCGTTACCCATGGTCTCTGACAGTCTTGATCTTCTTCCTATGACGACGGCTTCATCTTGTAATTCTGTTTGTCCTTTCTCCAGACAGGAAAACAGTGTTGTGGCATCAAAAGAGTCAGCAAAGTCTGCAAAGAAACTTTCTGGACTCATAATTTTCTATGCTATTGTTATGGTTGTGGAAGTTATTGGTGGTGTAAAAGCTCATAGCCTAGCTGTCATCAGCGATGCTGCACACTTGCTTTCTGATATTGCTGGATTCTCTATCTCTCTCTTTGCAGTATGGGCTTCAGGTTGGGAGGCAACACCACATCAATCTTTTGGATACAATCGTCTTGAGGTTTTGGGTGCTCTTTTCTCTGTACAGTTAATTTGGTTAATATCTGGTTTTTTGATATATGAAGCAGTTGGTAGACTTCTTCACCAAAATGAGAGGGTGAATGGAATGCTCATGTTTGCAATTGCAGCATTTGGGTTTGTTCTTAATCTTATCATGGTTGTATGGATTGGTCATGATCATAGTCATCATCATGGCTTTGGAGACTCAGATCATGGTCATGGTCATGGTCATTGCTGTGGAGCCTCAGATCATGATCATGGGATGGAGGAACTACCTAAAATAGCTGATGAGGAGAACCTTACAATGCTTTCAAGTAGTCGGAAAAATATTAATGTCTTGAACATAAACCTCCAAGGGGCCTATTTGCATGTCATGGCTGATATGATTCAATCTATTGGAGTGATGATTGCTGGAGCCGTAATATGGGCTGAACCAGGGTGGTATATGGTTGACCTTATATGCACTCTTGTATTCTCTGTTTTATCCTTAGGTACTACTCTTCCCATGCTTAGGAATATTTATGGCATTCTGATGGAGAGGACACCGAGTGAGATCAATATCATTCAGCTAGAAAATGGCCTCAGAAGTATCAGGGGAGTGCAGGATGTTCATGACTTACACGTTTGGGCCATAACAGTTGGAAAAAATGTTTTATCTTGTCATGTAGTGGCTGAGCCTGGCATTAATTCCATTGATTTACTTGGCACGATTAAGCATTATTGTGAAAAAACATATCAAATACAACATGTAACCATTCAAATTGAGTAA 1158 0.4059 MEHEKAPILEEARSKQEIALPMVSDSLDLLPMTTASSCNSVCPFSRQENSVVASKESAKSAKKLSGLIIFYAIVMVVEVIGGVKAHSLAVISDAAHLLSDIAGFSISLFAVWASGWEATPHQSFGYNRLEVLGALFSVQLIWLISGFLIYEAVGRLLHQNERVNGMLMFAIAAFGFVLNLIMVVWIGHDHSHHHGFGDSDHGHGHGHCCGASDHDHGMEELPKIADEENLTMLSSSRKNINVLNINLQGAYLHVMADMIQSIGVMIAGAVIWAEPGWYMVDLICTLVFSVLSLGTTLPMLRNIYGILMERTPSEINIIQLENGLRSIRGVQDVHDLHVWAITVGKNVLSCHVVAEPGINSIDLLGTIKHYCEKTYQIQHVTIQIE. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03806 385 Pfam Cation efflux family 68 308 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca4g03806 385 Gene3D Cation efflux protein transmembrane domain 60 307 IPR027469 -
Seca4g03806 385 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 35 385 - -
Seca4g03806 385 NCBIfam cation diffusion facilitator family transporter 65 385 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Seca4g03806 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 313 385 IPR036837 -
Seca4g03806 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 64 309 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03806 Seca-Chr4 67175325 67177360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03806 1 385 Inorganic Solute Cotransporters AT2G29410 48.969 9.59e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03806 K14689 - gmx:100777590 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03806 4 67175325 67177360 Seca4g03806 4 67175325 67177360 ECH