Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03785 ATGGGAGTTCGGTGCTCTAAATTCTCTATGTGCTGGTGGCCTTCCAATATCAAATCAAACCTCCATGACATGTCTGATAATGATGATGGGAACAAGAATGAGAAGGATCATTGGGTTGGTTTCACTGAGTACACCTTGGATCAACTAAAATTTGCCACTTCAGGATTTTCACCAGACAACATTGTCTCAGAACATGGTGAGAAGGCTCCTAATGTTGTCTACAGAGGAAGGCTTGAAGATGATAGGTTGGTTGCCGTGAAGCGCTTCAACAAATCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAAGCACGAGCAGTGGGGCAGCTGCGGAATGAACGATTAGCTAACTTGGTTGGGTGTTGCTGCGAAGGAGAAGAAAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCGAAACATCTTTTTCACTGGGAGACTCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCCTTATATTTGGCACAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAATAGTAGAGATGGCAGAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTACTTGAGGACAGGAAGAATCACCCCTGAAAGTGTAGTTTACAGTTTTGGCACCTTATTGCTTGATCTTCTGAGTGGAAAGCATATTCCACCCAGTCATGTATATTTCTCATTTCCATTTGCACTTGACCTTATACGAGGCAAAAATTTTCTGTTGCTGATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCATCGCGTTGTTTACAATATGAACCTCGTGAGAGACCGAATGCCAAATCACTTGTCACTGCTCTAACCCCTCTTCAGAAGGAAACTTCAGTACCGTCAAATGTTTTAATGGGCATACCAGATGGGAGTCTATCATCAAAGGAAACAGTTTCATTAACACCTTTTGGAGAAGCTTGTTCAAGAAGAGATCTGACTGCAATACATGAAATCTTGGAAAAGGTGGGCTACAAGGATGATGAAGATGTTGCGAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGACACACTAAATTCTAAGAAGCATGGCGATTCTGCTTTTCATGCTAAAGACTTCTCTACTGCCATTGACTGCTATACACAATTCATCGATAGTGGGACCATGGTATCGCCAACTGTGTATGCCAGGCGCTGCTTATGCTACCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCCATATCTCCTACCTGGCCTACTGCATTCTATCTTCAAGCAGTTGCCCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGCACAACACTGGAAACCAGAAGGCATAGAAATTGA 1497 0.4309 MGVRCSKFSMCWWPSNIKSNLHDMSDNDDGNKNEKDHWVGFTEYTLDQLKFATSGFSPDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWETQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITPESVVYSFGTLLLDLLSGKHIPPSHVYFSFPFALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKETSVPSNVLMGIPDGSLSSKETVSLTPFGEACSRRDLTAIHEILEKVGYKDDEDVANELSFQMWTNQIQDTLNSKKHGDSAFHAKDFSTAIDCYTQFIDSGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISPTWPTAFYLQAVALFSLGMDNDAQESLKDGTTLETRRHRN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03785 498 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Seca4g03785 498 SUPERFAMILY TPR-like 396 488 IPR011990 GO:0005515
Seca4g03785 498 Gene3D Transferase(Phosphotransferase) domain 1 136 335 - -
Seca4g03785 498 FunFam probable serine/threonine-protein kinase At5g41260 136 334 - -
Seca4g03785 498 ProSiteProfiles Protein kinase domain profile. 59 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03785 498 SUPERFAMILY Protein kinase-like (PK-like) 35 323 IPR011009 -
Seca4g03785 498 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 497 IPR045845 GO:0004672|GO:0009742
Seca4g03785 498 Pfam Protein tyrosine and serine/threonine kinase 72 317 IPR001245 GO:0004672|GO:0006468
Seca4g03785 498 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Seca4g03785 498 FunFam probable serine/threonine-protein kinase At4g35230 391 498 - -
Seca4g03785 498 Gene3D Tetratricopeptide repeat domain 392 497 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03785 Seca-Chr4 66563174 66567282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03785 14 340 Glycoside Hydrolase AT3G07070 32.948 6.73e-41 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca4g03785 PK_Tyr_Ser-Thr 7.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03785 - - gmx:732542 920.998