Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03783 ATGGCAGGCAAAGATAGTCTGAATTCATCTGGAGATGGGAGGAGAATTCCAATTTGCAATTTATTTACGGATGCTAGATTAGTTTTCAAATCTGACAATCTTGGTCGTGAAATATTATCAATTGCATTGCCTTCCACAATGGCTTTGACAGCTGACCCTATTGCTTCACTGGTTGACACAGCATTCATTGGCCAAATAGGTCCAGTGGAGCTTGCAGCCGTAGGAGTGTCTATAGCCCTCTTCAATCAGATATCAAGAATTGCAATTTTCCCACTAGTCAGTGTTACCACCTCTTTTGTGGCTGAGGAAGATACCCTTACTGAAGCCAGACCTCTGGAAGAGGACTGTGAATGCTTGGAAGCATGTCCAATTATGAATGCTGAAACAAAAGAGCTCATAGCACATAAAGTTCCTTTTTCTTGGTCAGATGTTCACAAAGTAGATTTGTCTGATGCTAGCTTTAATACAGTTAAGATTGAGCATAAGAGAAGGCATATCCCTTCTGCTTCATCAGCATTAGTTCTCGGTGGCATTATTGGCCTCATCCAGGCAATATTCCTCATATCTGCCGCAAAACCTTTACTGAACTTCATGGGAATAACCTCTGACTCTCCTATGCTAAACCCTGCACAGAAGTACCTGACATTGAGGTCCCTTGGTGCTCCTGGAGTTCTTCTCTCATTAGCAATGCAGGGAGTCTTCCGAGGATTTAAAGATACTAAAACACCTCTATATGCCACCGTGGCAGGAGATGTGACCAACATAGCTCTAGATCCTTTATTCATATTTGTATTCCGCTTGGGTGTCACTGGTGCAGCCATTGCTCATGTTATATCTCAGTATCTAATTTCTGTTATACTCCTGTGGAGCTTGATGGAAAAAGTTGATCTTATACCCCCAAGCATCAAGCTTCTTCAATTTGATCGATTTCTTAAAAACGGTTTCCTATTATTAATTAGAGTGATTGCTGTAACATTCTGCGTGACTCTGGCAGCATCATTAGCTGCGCGCCAGGGATCGACATCCATGGCTGCATTCCAAGTCTGCCTGCAGATTTGGTTGGCAGTGTCTCTTCTTGCTGATGGTCTGGCTGTTGCTGGGCAGGCTATTCTTGCAGGTGCATTTGCTAACAAGGACTTTGACAAGGCCAAAGCAACCGCATCCCGAGTATTACAGCTGGGTTTGGTTCTGGGATTGGCTCTTGCATTCATTCTTGGAATAGGACTGCATTTTGGAGCTAAACTATTTACAAAAGATGCAGATGTTCTCCACCTCATTAGGGTTGGGATACCGTTCGTAGCAGCCACTCAACCCCTCAACGCTTTGGCATTTGTATTTGATGGTATCAACTTTGGGGCATCTGATTTTGCATATTCAGCCTTTTCTTTGGTTATGGTGGCAATTGTCAGCATCATTTGCCTACTTATTTTATCCTCAGCTGCCAGTTACACAGGAATTTGGATTGCTTTGACCATCTATATGGGTCTTAGAGCATCTGTTGGCTTCTTGAGTCATTGA 1518 0.4315 MAGKDSLNSSGDGRRIPICNLFTDARLVFKSDNLGREILSIALPSTMALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQISRIAIFPLVSVTTSFVAEEDTLTEARPLEEDCECLEACPIMNAETKELIAHKVPFSWSDVHKVDLSDASFNTVKIEHKRRHIPSASSALVLGGIIGLIQAIFLISAAKPLLNFMGITSDSPMLNPAQKYLTLRSLGAPGVLLSLAMQGVFRGFKDTKTPLYATVAGDVTNIALDPLFIFVFRLGVTGAAIAHVISQYLISVILLWSLMEKVDLIPPSIKLLQFDRFLKNGFLLLIRVIAVTFCVTLAASLAARQGSTSMAAFQVCLQIWLAVSLLADGLAVAGQAILAGAFANKDFDKAKATASRVLQLGLVLGLALAFILGIGLHFGAKLFTKDADVLHLIRVGIPFVAATQPLNALAFVFDGINFGASDFAYSAFSLVMVAIVSIICLLILSSAASYTGIWIALTIYMGLRASVGFLSH. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03783 505 NCBIfam MATE family efflux transporter 44 487 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g03783 505 CDD MATE_DinF_like 34 503 IPR044644 -
Seca4g03783 505 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 16 503 IPR044644 -
Seca4g03783 505 Pfam MatE 319 472 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g03783 505 Pfam MatE 168 260 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03783 Seca-Chr4 66552712 66559808 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03783 K26938 - gmx:100780165 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03783 4 66552712 66559808 Seca4g09899 4 231723961 231728903 ECH
Seca4g03783 4 66552712 66559808 Seca4g03783 4 66552712 66559808 ECH
Seca4g03783 4 66552712 66559808 Seca4g08999 4 214559936 214565450 PCT