Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03780 ATGAGGAAGCCTGATCCATCTGGGAAAAACAACACCAATAAATTTAGAAAGGGGTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGTTAAATAATGGACAAGGTTGTTGGAGCGATGTGGCTAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGGTGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCACAAGAAGAGGAACTCATCATCCATTTACATTCACTTCTTGGAAACAGATGGTCTCAAATAGCGGCACGCTTACCTGGGCGAACAGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCATCCACAACCTCAACTTCACCAAACCCAAGCGAGTCCTCATCATATGAGCCTAACATGCAGGGAGGGTTTACTTCTAATATTTCTACACATGATGACTTTATGCCCATGTTCAATTCATCTCCATCACCATCAATGCAAGCCACAATTCTCAATACCATAATTGACAGGTTGCCTATGTTTGATCAACATGGAATAAACATGCCAGCTCCAATTGGTGGATTCTTCAACAGTACTACAGGGCCATGCTTCTCAGAGAGTTATAATTTGGAAAACAGAGTCTTTGAGATTGTAAATATTGGGGCAGAGGGGGAGACTTATGTTCCTTCTCTAGAAAGTGTTAGTACTATTTCAGACCATAACATAAAAGTAGTGGAGAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGTATCATTAACAACAATAAGAGAGCTACAGGGGTGGAGAATTTATTTCAAGAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGACTTGATGAAACATGTTTCATCTTTTCCCTTGCTTGATTTTTCAAACTGA 918 0.4009 MRKPDPSGKNNTNKFRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTSTSPNPSESSSYEPNMQGGFTSNISTHDDFMPMFNSSPSPSMQATILNTIIDRLPMFDQHGINMPAPIGGFFNSTTGPCFSESYNLENRVFEIVNIGAEGETYVPSLESVSTISDHNIKVVENTDTNNSYFDDINSIINNNKRATGVENLFQEELTMGEWDLEDLMKHVSSFPLLDFSN. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03780 305 PANTHER MYB DOMAIN PROTEIN 55 10 247 - -
Seca4g03780 305 Gene3D - 17 69 - -
Seca4g03780 305 CDD SANT 72 112 IPR001005 -
Seca4g03780 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Seca4g03780 305 FunFam MYB transcription factor 14 70 - -
Seca4g03780 305 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Seca4g03780 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Seca4g03780 305 MobiDBLite consensus disorder prediction 121 147 - -
Seca4g03780 305 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Seca4g03780 305 SMART sant 69 117 IPR001005 -
Seca4g03780 305 SMART sant 16 66 IPR001005 -
Seca4g03780 305 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Seca4g03780 305 CDD SANT 20 64 IPR001005 -
Seca4g03780 305 Gene3D - 71 142 - -
Seca4g03780 305 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Seca4g03780 305 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Seca4g03780 305 FunFam Transcription factor MYB46 71 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03780 Seca-Chr4 66434756 66438753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03780 1 298 MYB Transcription Factor Family AT5G12870 47.682 1.12e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g03780 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03780 K09422 - gmx:100786151 423.705