Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03774 ATGGAGGCCATGGGAATTTTGGAGAGAGACCTAAAGAAAATGAGGGACTATTTTGAGAGTGGAAAGACTAAGGAAGAGTCTTGGAGAGAATCACAGCTCAAAGGGTTGTATCGTTTCCTTATGGAAAAACAAGAAGACATCATGAAGGCCCTCATGCAAGATTTAGGGAAACACCAAATTGAATCTTTTAGAGATGAGGTAGGAACGTTGATGAAGACCTTAAATCTAGCATTGAAGTGTTTGAAAGAGTGGATGTCTGGCAAAAAGGCTAAATTGCCACAAATAGCATTGCTTACAAGTGCAGAAATTGTTCCCGAGCCTCTGGGTCTTGTCCTCATTATTTCATCTTGGAATTTCCCCTTTGGAATTTCCTTGGAGCCACTGATAGGAGCAGTAGCAGCAGGAAACGCTGTAGTGTTAAAGCCTTCAGAGTTGTCTCCTGCAAGTTCTTCTCTACTTGCCTCTGCTCTTCCCACTTACTTGGACAATGAAGCCATTAAGGTCATTGAAGGTGGACCAGAGGAGTCAGAGCAACTACTACAACAAAGATGGGACAAAATCTTCTTTACAGGAAGTGCACGTGTGGGGCGAATTGTGATGTCTGCAGCAGTGAAGCATCTGACTCCTGTCACTCTGGAATTGGGTGGAAAATGCCCTGCTGTTGTTGACTCTCTTTCATCTCCTTGGGATATACAGGTGGCTGTGAAGCGGATTATTGTGGGGAAATATGGGACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCCTTGTGGAATCTGGATACTGTTCAAAACTGGTGGAATTGATTAAGGTGTGGATCAAGAAAATGTTTGGAGACAAGCCACAACATTCCAAGACTATTGCTAGGATAGTTAATAAACAACATTTCTCTAGATTAAAGAATCTTCTTGCTGATGAAAAGGTCAAAAAATCTGTGGTTTATGGTGGCTCAATGGACGAAGAAAACTTATTTATTCAACCAACAATCTTGGTGGATCCCCCACTTGATGCAGCAATCATGTCAGAAGAAATTTTTGGTCCATTGCTTCCGATTATTACTGTGGAGAAGATTGAGGACAGCATTAAATTCATAAGTTCTAGGCCTAAGCCTCTTGCTCTTTATGTTTTCACCAAAAACCAAACACTCCAGAAAAGAATGATATCTGAGACATCATCTGGCAGTGTGACTTTCAATGATGCGATTCTACAATATGCAGCGGATTCTCTCCCATTTGGAGGAGTGGGTGAAAGTGGGTTTGGCATGTACCATGGAAAGTTCTCTTTTGACACATTCAGCCACCAAAAGGCAATTGTGAGGAGGAGTTACCTCACTGATTTTTGGTATAGATATCCTCCATGGACAGTTAATAAGTTTCAACTACTTGAGGTCTCTTACAATTATGATTATCTGGGATTGCTCCTTGTCATTCTGGGCTTAAAAAGACCATCAAAACGCAATATCATACCTTGCTGA 1479 0.4151 MEAMGILERDLKKMRDYFESGKTKEESWRESQLKGLYRFLMEKQEDIMKALMQDLGKHQIESFRDEVGTLMKTLNLALKCLKEWMSGKKAKLPQIALLTSAEIVPEPLGLVLIISSWNFPFGISLEPLIGAVAAGNAVVLKPSELSPASSSLLASALPTYLDNEAIKVIEGGPEESEQLLQQRWDKIFFTGSARVGRIVMSAAVKHLTPVTLELGGKCPAVVDSLSSPWDIQVAVKRIIVGKYGTCAGQACIAIDYVLVESGYCSKLVELIKVWIKKMFGDKPQHSKTIARIVNKQHFSRLKNLLADEKVKKSVVYGGSMDEENLFIQPTILVDPPLDAAIMSEEIFGPLLPIITVEKIEDSIKFISSRPKPLALYVFTKNQTLQKRMISETSSGSVTFNDAILQYAADSLPFGGVGESGFGMYHGKFSFDTFSHQKAIVRRSYLTDFWYRYPPWTVNKFQLLEVSYNYDYLGLLLVILGLKRPSKRNIIPC. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03774 492 FunFam Aldehyde dehydrogenase 216 419 - -
Seca4g03774 492 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 15 437 IPR016162 GO:0016491
Seca4g03774 492 FunFam Aldehyde dehydrogenase 15 219 - -
Seca4g03774 492 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 216 419 IPR016163 GO:0016620
Seca4g03774 492 Coils Coil 41 61 - -
Seca4g03774 492 PANTHER ALDEHYDE DEHYDROGENASE 7 474 IPR012394 GO:0006081
Seca4g03774 492 PIRSF ALDH 2 475 IPR012394 GO:0006081
Seca4g03774 492 SUPERFAMILY ALDH-like 10 456 IPR016161 GO:0016491
Seca4g03774 492 Pfam Aldehyde dehydrogenase family 13 439 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03774 Seca-Chr4 66357507 66361207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03774 1 483 Aldehyde Dehydrogenase Gene Family AT4G36250 53.512 0.0 571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03774 K00128 - gmx:100784210 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03774 4 66357507 66361207 Seca4g03774 4 66357507 66361207 ECH
Seca4g03774 4 66357507 66361207 Seca4g08993 4 214328586 214330845 PCT