Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g03771 | ATGGGGACGCCGATTGAGGAAGTGCGAACTCTTTGGATTGGGGATTTACAGTATTGGGTTGACGAATCGTATCTCTCTCAGTGCTTCGCTCACACCGGCGATGTAGTTTCCGTCAAGATCATACGCAACAAGATAACGGGCCAACCCGAGGGGTACGGCTTTGTGGAGTTCGTTTCTCACGCAGCAGCGGAACGGGTTCTTCAGACTTACAACGGCACGCAAATGCCCGGAACCGAACAGGCTTTCAGGCTTAATTGGGCTTCTTTGGGTGGTGATGCTGGGCCCGACCACTCTATCTTCGTTGGTGATCTCGCTCCTGATGTTACGGATTATTTGCTCCAGGAGACTTTCCGAGTCCATTATCCTTCGGTTAGAGGTGCCAAAGTAGTCACTGACCCTGTTACTGGCCGTTCCAAAGGGTATGGGTTTGTTAAATTCTCTGATGAGAGCCAGAGGAATCGTTCCATGACCGAAATGAATGGGGTTTATTGCTCAACGCGTCCAATGCGTATTAGCGCTGCTACGCCTAAGAAGACAACTGCTTTTCAACACCAATATGCTCAGCCAAAAGCAGCAGCAATATATCCAGTACCAGCATACCCTGCCCCAGTGAATCCAGTTCCACCAGAAAATGATATGAATAATACTACTGCTTTTGTTGGTAATTTGGATCTTAGTGTCACAGAGGAAGAACTTAAGCAGACCTTTTTGCCATTTGGAGATATTGTATCTGTAAAAGTTCATGCTGGCAAAGGATATGGTTTTGTCCAATTTGGAACTAGGTTTTATTTTCCCCCCTTAATCTTTAACATGTGA | 816 | 0.4657 | MGTPIEEVRTLWIGDLQYWVDESYLSQCFAHTGDVVSVKIIRNKITGQPEGYGFVEFVSHAAAERVLQTYNGTQMPGTEQAFRLNWASLGGDAGPDHSIFVGDLAPDVTDYLLQETFRVHYPSVRGAKVVTDPVTGRSKGYGFVKFSDESQRNRSMTEMNGVYCSTRPMRISAATPKKTTAFQHQYAQPKAAAIYPVPAYPAPVNPVPPENDMNNTTAFVGNLDLSVTEEELKQTFLPFGDIVSVKVHAGKGYGFVQFGTRFYFPPLIFNM. | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g03771 | 271 | SMART | rrm1_1 | 217 | 270 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | SMART | rrm1_1 | 10 | 85 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | SMART | rrm1_1 | 98 | 172 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | SUPERFAMILY | RNA-binding domain, RBD | 95 | 261 | IPR035979 | GO:0003676 | |
| Seca4g03771 | 271 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 258 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | Gene3D | - | 96 | 173 | IPR012677 | - | |
| Seca4g03771 | 271 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 6 | 261 | - | - | |
| Seca4g03771 | 271 | FunFam | Polyadenylate-binding protein RBP47B | 8 | 86 | - | - | |
| Seca4g03771 | 271 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 77 | IPR035979 | GO:0003676 | |
| Seca4g03771 | 271 | CDD | RRM2_SECp43_like | 96 | 175 | - | - | |
| Seca4g03771 | 271 | Gene3D | - | 8 | 88 | IPR012677 | - | |
| Seca4g03771 | 271 | CDD | RRM1_SECp43_like | 10 | 88 | - | - | |
| Seca4g03771 | 271 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 9 | 89 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 97 | 176 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | FunFam | Polyadenylate-binding protein RBP47B | 87 | 187 | - | - | |
| Seca4g03771 | 271 | Gene3D | - | 204 | 262 | IPR012677 | - | |
| Seca4g03771 | 271 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 219 | 259 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 99 | 163 | IPR000504 | GO:0003723 | |
| Seca4g03771 | 271 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 79 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g03771 | Seca-Chr4 | 66339111 | 66341415 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca4g03771 | 10 | 260 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.996 | 1.18e-21 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g03771 | - | - | lja:Lj3g3v3240000.1 | 440.654 |