Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03759 ATGAGTTGGAACCCACACATGGAGGTCCATTACAATAACATCAGCTATCCCTATAGTACTGCTGGAAGCTTTATTGAATATTTTGAAGGTCTCACCTACGAACATGTCAACTTTATTTTTTCCGGTGCATCACATTCTCAGGAGAGTTCATACCCTTCAAATTCAGGCTTTTACAAGTTTGGATGGTCTGAACCTGAGAGTAATTCATACTATCGTTACAATCATGGTTATGATGTAAATCATCAGGAACCACTGGTGGATGAATATAGGAGGCCTTCAGAAAATTCATCGACAATCAATGAACAGACAGCAGCTGTAAGCACAGAGTGGGGGGAAGGTGGAAACACTGACACACGAGACAGTTCTATTGAATGTCCACGAAGACATCATAGTAATTCCAATGATTATCAGGTCATTTTGCAAGACAATATTGATCCTGACAACATGACCTATGAGGAACTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTTGCTTCCAGTGTCAAAGTACAAGTGTGGGTTCTTCTTGAGGAAGAAGTCAAGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGGGACAAGCGGATCACTTTGCCATGTAAACATGTCTATCATGCCAGTTGTGGGAACAGATGGCTTAGCATCAATAAGGCAAGATATTTACCAATTTATTATGAACTTGTTAAGCTTGCCCTATATGTTACACGGAAGTGTTTGCCGACAAGTCAAAGCACAAATAATAGCACGAGCGAATGA 798 0.411 MSWNPHMEVHYNNISYPYSTAGSFIEYFEGLTYEHVNFIFSGASHSQESSYPSNSGFYKFGWSEPESNSYYRYNHGYDVNHQEPLVDEYRRPSENSSTINEQTAAVSTEWGEGGNTDTRDSSIECPRRHHSNSNDYQVILQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYKRGDKRITLPCKHVYHASCGNRWLSINKARYLPIYYELVKLALYVTRKCLPTSQSTNNSTSE. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03759 265 MobiDBLite consensus disorder prediction 93 130 - -
Seca4g03759 265 SUPERFAMILY RING/U-box 192 232 - -
Seca4g03759 265 Pfam Ring finger domain 195 230 IPR001841 -
Seca4g03759 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 234 IPR013083 -
Seca4g03759 265 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Seca4g03759 265 MobiDBLite consensus disorder prediction 93 120 - -
Seca4g03759 265 FunFam E3 ubiquitin ligase BIG BROTHER 158 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03759 Seca-Chr4 66007369 66012277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03759 5 232 C3H Transcription Factor Family AT3G63530 41.453 2.62e-54 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03759 K19045 - gmx:100793907 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03759 4 66007369 66012277 Seca4g03759 4 66007369 66012277 ECH
Seca4g03759 4 66007369 66012277 Seca4g03759 4 66007369 66012277 PCT