Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03757 ATGACCAATTCCTACAGCTCCTCCAATGAGTTCAACTTTTTGTTGGACCTCAATTCTCCATGTCTTCTCCCTTCTTATTCTTCTTCTTCATCTTATTCCAACCCACCATTCCATTTTCCTTCTAGTTATCATAACTGCACAAGTCACATAACTCCTCTAAGAAAACCCCTTCCTGATCTCCTTCATCAAAGCCCTACAAGACATGAAGATCTTGAATCTTCATTTAGTACCATGGAAATTAAAAAGAAGGAGAAAGATCAGCAAAGTATATCATCTAACTCTTTGGATGAGGACGAGGCTGTAACGGTGGCTTTACACTTAGGGCTTCCAGCAGCTGATTTAGCTTACTCCTCACAGAAAGAAGAAAAAGTGAGTGTTGGTTCCTCTGAGTGTTTGTCAAATAGATCAATTAACAGAGGACAATATTGGATCCCCACTTCTACTCAGATTCTTATTGGTCCAACACACTTCTCATGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAGTATAGAAAGGGACCAGAGTCTCTAAGGGGAACACAGCCAACAGCTATGCTTAAACTCCCTTGTTTTTGCTGTGCACCTGGATGTAAGAACAACATTGACCATCCAAGAGCAAAACCACTCAAAGACTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAACGAAACCTTTCATGTGTAGAAAATGTTGCAAATCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAAAAAAACTGTGGGAAGCTCTGGTATTGTTCTTGTGGGTCTGATTTTAAGCATAAAAGATCACTTAAAGATCATATCAAGGCATTTGGACATGGACATACATGCTATGGAATTGATTGTCTTGATCAATATGATGAAGCAGGCTCTGAAATTGAACAAGAAAATTAA 945 0.3979 MTNSYSSSNEFNFLLDLNSPCLLPSYSSSSSYSNPPFHFPSSYHNCTSHITPLRKPLPDLLHQSPTRHEDLESSFSTMEIKKKEKDQQSISSNSLDEDEAVTVALHLGLPAADLAYSSQKEEKVSVGSSECLSNRSINRGQYWIPTSTQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCCKSFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHGHTCYGIDCLDQYDEAGSEIEQEN. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03757 314 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Seca4g03757 314 SMART c2h2final6 157 179 IPR013087 -
Seca4g03757 314 SMART c2h2final6 267 290 IPR013087 -
Seca4g03757 314 SMART c2h2final6 203 236 IPR013087 -
Seca4g03757 314 SMART c2h2final6 241 261 IPR013087 -
Seca4g03757 314 MobiDBLite consensus disorder prediction 63 95 - -
Seca4g03757 314 SUPERFAMILY beta-beta-alpha zinc fingers 223 261 IPR036236 -
Seca4g03757 314 PANTHER ZINC FINGER PROTEIN WIP2 38 312 IPR043584 GO:0003700|GO:0010468
Seca4g03757 314 MobiDBLite consensus disorder prediction 63 92 - -
Seca4g03757 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Seca4g03757 314 FunFam Zinc finger protein WIP2 210 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03757 Seca-Chr4 65893963 65896452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03757 52 312 C2H2 Transcription Factor Family AT1G51220 62.937 2.76e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g03757 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03757 - - gmx:100789416 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03757 4 65893963 65896452 Seca4g03757 4 65893963 65896452 ECH
Seca8g04891 8 135470815 135473338 Seca4g03757 4 65893963 65896452 ECH
Seca2g04077 2 123308581 123310614 Seca4g03757 4 65893963 65896452 ECH
Seca4g03757 4 65893963 65896452 Seca4g08981 4 214090041 214092956 PCT