Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03742 ATGGAGTCAGATCTTCAGCAACACCCTCCCATGTTTCTGGACCATCAGCACCACCACCAGAACCAGATGAATTCAGGCTTAACCAGGTTCCGATCAGCTCCAAGTTCGTATTTTTCGAATATCATTGACAGAGAGTTCTACGAACACGTCTTCAATCGCCCCTCAAGCCCTGAAACAGAGCGAATTTTCCAACGGTTTGTGAATAGTCTTGGTGATGGTGACGGTGCTGCAGAGGATTCACTTGCTCAGAATCTCTCAACTGTTCAACAACAACAAGTTCCTGCAGTGAAGGAAGAGGTTAATCAACAACAGCAATCTCAGGCTATGCCAATGCCATCGATGAATAATGAACCCGTGGTTCTACAACAACAACCACAAAGCAATATGATGAATAATTTTAGTTCCTCTGCCCCTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAACACAGATGAAGACTGGTCGTGCAAATAATTCGACTCTTATCAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATCAACATTGAAAGTGTGGCAGGCTATGCTGCTATAAGAGGCATGGGAACTTTGGGAGCTGGTAATAACACGAGTGAGGAAGCAAAATTTTCTCCTGCAACGAGGTTGAAGAATGCACCAAACTTCTCCTCAGGGTTAATGTCATCAATAGCTGAAACTGGGAATAAAAGCAGTGCACAAAATAATCCAGAAAGTGAAGGTTTTGCTGAAAGCATCCCAGGTTTCCCTGTAGGTCCTTGGGATGATTCTGCAATGATGTCTGACAATATGACTGGTGTAAAAAGATACAGAGATGATCATGATGTTAAACCATTTTCTGGTTTAAATGCAGCTGAAAACCAGAATGAAAAAGGAGGAGGCCAGCCTCCTGCTCCTTTGGCTCATCACTTGAGTTTACCAAATACTTCAGCAGAAATGGCAGCCATTGAAAAGTTTTTGCAGTTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGCTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTTGTCCCTAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACTCTTTCAGACAATCGAGCTAAGTGTACGTGTTCACACAACAAGCAACAGCAGCAATAA 1242 0.43 MESDLQQHPPMFLDHQHHHQNQMNSGLTRFRSAPSSYFSNIIDREFYEHVFNRPSSPETERIFQRFVNSLGDGDGAAEDSLAQNLSTVQQQQVPAVKEEVNQQQQSQAMPMPSMNNEPVVLQQQPQSNMMNNFSSSAPQNFYQSTGRPPLPTQMKTGRANNSTLIRHGSSPAGLFSNINIESVAGYAAIRGMGTLGAGNNTSEEAKFSPATRLKNAPNFSSGLMSSIAETGNKSSAQNNPESEGFAESIPGFPVGPWDDSAMMSDNMTGVKRYRDDHDVKPFSGLNAAENQNEKGGGQPPAPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVQTLSDNRAKCTCSHNKQQQQ. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03742 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 411 - -
Seca4g03742 413 Coils Coil 379 399 - -
Seca4g03742 413 SMART finulus 345 395 IPR011598 GO:0046983
Seca4g03742 413 MobiDBLite consensus disorder prediction 200 260 - -
Seca4g03742 413 MobiDBLite consensus disorder prediction 200 244 - -
Seca4g03742 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 402 IPR036638 GO:0046983
Seca4g03742 413 FunFam Transcription factor bHLH130 family 340 409 - -
Seca4g03742 413 MobiDBLite consensus disorder prediction 274 307 - -
Seca4g03742 413 Gene3D - 340 412 IPR036638 GO:0046983
Seca4g03742 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Seca4g03742 413 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03742 Seca-Chr4 65549656 65552629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03742 1 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.766 4.85e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03742 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03742 - - gmx:100803833 611.683