Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03735 ATGGCTCACTGGCCAGCTAAGTCAAAATGGAATAACATAGATTACTTGCTAAGAGTTGCTGGTGATCGCACAGTTCCAGTTGAGGTTGGGAAGAACTATCTATGTGCAGATTGGAAGCAAGAACTAATTACATTTTCAGAGTTTCTTGAGCGGATAAAGTCCAGTGGTCATTCTCCTGGTTGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTAGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGCGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTGACACCACTACACCATGATCCACATCATAACATACTAGCTCAGGTTGTTGGGAAAAAATACATCAGGCTTTATTCAGCAGCATTGTCTGAGGAACTTTTCCCCTACTCAGATACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGCAAGTTTCCTAAGGTGCAAGACTTGGAATTTGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATATATCCCTCCAAAATGGTGGCACTATGTGCGCTCTTTAACTACCAGTATATCGGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCAGATGCATCCTAA 645 0.4155 MAHWPAKSKWNNIDYLLRVAGDRTVPVEVGKNYLCADWKQELITFSEFLERIKSSGHSPGCPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSAALSEELFPYSDTMLSNSSQVDLDDVDESKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSISVSFWWSEGESSDAS. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03735 214 Pfam Cupin-like domain 1 207 IPR041667 -
Seca4g03735 214 Gene3D Cupin 1 206 - -
Seca4g03735 214 ProSiteProfiles JmjC domain profile. 72 214 IPR003347 -
Seca4g03735 214 FunFam lysine-specific demethylase JMJ30 1 205 - -
Seca4g03735 214 SUPERFAMILY Clavaminate synthase-like 2 206 - -
Seca4g03735 214 SMART cupin_9 63 213 IPR003347 -
Seca4g03735 214 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03735 Seca-Chr4 65428738 65433096 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03735 1 205 Acyl Lipid Metabolism Gene Families AT3G45880 24.701 1.56e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca4g03735 Cupin_8 3.7e-43 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03735 K24444 - lja:Lj3g3v3271520.1 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03735 4 65428738 65433096 Seca4g03735 4 65428738 65433096 ECH