Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03729 ATGGATCCAGAAAGATCAGTAGAGGACCAGTTCTCCAAACTACATCCTTCCTTGCCAGTAAACACCAGAATTGGAATAGTGGGTGGTGGTCCAAGTGGCTTATCAGCTGCTTATGCACTAGCCAGGCTTGGTTATGAGAATGTCACAGTATTGGAGAAACATCATACTGTTGGTGGCATGTGTGAATCAGTGGAAATTCAAGGAAAAGTTTATGATCTTGGGGGGCAAGTTCTTGCTGCAAGCAGTGCTCCAATCATCTTTCACTTGGCAAAAGAGACAGGCTCTGCGCTAGAAGAAATGGACTCTCACAAACTTGCTGTTATTGACCCTTCCTCTGGAGAATATCAAGATATTAAAGTTGTTGATGATTATGTATCTGTTATGTCACTTACATTGGAAATACAAGAAAAGGTGAAGAACTGTGGCCGTATTGGGGTCCATGCTGTGAGTGACATTGCTGCAGACTTAACTCCAGAGTATCTTGAGTGTCATGGGCTCAAATCCATTCCTAAATCTGTAGCTTATGGTTACACTGCTTCAGGATATGGGTTTGTTCAAGACATGCCTTATGCCTACCTTCATGAATTTACTAGAACATCCATGGCAGGAAAAATTAGACGGTTTAAAGGTGGATATATGAGCCTTTGGCAAAAGATTGCTGAATCACTTCCTTTAAAACTCCGCTGTAACACTGAAGTATTGGCAATCAGGAGGAACTCTGATGGTGTCACTGTTGATGTCAAGAGCTTAGATGAAGTTGAAACTTTGGAATTTGATAAGATCATAATCTCTGGTCCATTTCCATTAAAATATGGAAGAATTTACAGATCATTGCCTTCAACTTGCATAGAATGTGAAAAGGAAGTAATGGATGTAAGTGAACTTGAAAAGGATTTGTTCAGCAAAGTGGAGACAAATGACTACTACACCACTGTTTTAAAGATTAAAGGGCTAGAACATTTGCCTGTTGGATTTTATTATATTAGTGAATATATGGAAGATCCCAGCACGATTGGAAATCCAGTTGCAATGCAGAAATATTATGCTGACACTAATATATTCTTGTTCTGGTCCTATGGAAACTCTGTTGATATTAAGGGGCCAACTGTCAAGGAGCTTGCGATCAAGGCAATAGAAGCTATGGGGGGTGAAGTTGAAAATGTCATTCTTCAACGCTGCTTTAAGTATTTTCCTCATGTTGGCAGCCAAGATATGAAAGATGGTTTCTATGAAAAGTTGGAATCAGAGCTTCAAGGTTCAAGGAATACTTACTATGTAGGTGGCCTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTCTGATGTGCAAGAACTTTGCAAATAGCAATGATTTGCCATTATTTCCTTACACTAAGAGTTTGTTTCCCTTGCAAACTGAGTGCCAGAACAAGAATCCTAAAGAATTAGGTGAATTGCCAGAAGTGCAATTTCCTAATTTGCCTACACTGAATAGCTACTTAAAGTACTGGGGAACTCATCCAATCACTCAAAACAGGACTCTTTATACTTGGATTAATGAAGAAGGGTCTCCAGTATGCCACAGGACCTATGGAGAACAGCATTTTAATGCTTCTTGCATTGCTCATAAGCTCTTAACAAGCCAAAAGCCAGTTATCAAGCCTGGTGACAGGGTTCTCCTGGTCTATGTCCCCGGTTTGGATTTCATCGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCATACCAGTCCCCGTTCTTCCCCCAGATCCCATGCAAAGAAGTGGGCAAGCCCTAATGAAAATTGAAAATATTTCCAAGTCATGTGGCATAGTGGCAATTTTGTCAACAGTAGCTTATCACTCAGCAGTCCGTGCAGGTTCATTGAAAAACTTCATTTCATTAACTGGAAAAAAGGGGAAATCATCAGCAAGGTGGCCGAATCTTCCATGGTTTCATACTGATACTTGGGTCAAGAACTCCAAAAGTATGGTTTTGGAAAATCTTGATGATCAATGTGAACCTCAGCCTGGTGACTTGTGTTTCTTGCAATTTACATCAGGATCAACTGGTGATGCTAAAGGAGTCATGATCTCTCATGGTGGGCTTATTCACAATGTAAAGTTGATGAGAAGTAGATACAAGAGCATCTCAAGGACAGTGCTAGTAATTTTGTTTTCACCAATGACATTTATCAAGAAACCACTCTTATGGCTTGAAACTATCAGCAAGTATCAAGCAACTCATAGTGCTGGCCCTAACTTTGCCTTTGAGTTAGTGATTCGAAGATTGGAGTCTGACAAGGATAAGCTCCAGAATTTAGACCTTTCATCCTTGATTTTTCTTATGGTTGCTGCTGAACCAGTGAGACAGAAGACCTTGAAAAGATTCATTGAGTTAACCAGTCCTTTTGGCTTATCTCAAAAGGTGATGGCTCCTGGATATGGCTTAGCAGAAAATTGTGTGTTTGTAAGTTGTGCATTTGGAGAAGGTAAGCCTATTATTGTTGATTGGCAGGGAAGAGTTTGTTGTGGCTATTTTCATCCAGAGGATGCAGATGTTGACATTAGAATAGTTGATCCACAGACTTGTGAAGAGCTTCAGGAAGATGGAAAGGAGGGAGAAATATGGATCAGTAGTCCAAGTGCAGGACTAGGATACTGGGGAAGGGAAGAATTGAGTCAAGAAACTTTCAGGAATGAACTTCAGAATCATCCTGGACGCAACTACACAAGAACTGGAGACCTGGGAAGAACAATAGATCAGAAGCTATTCATCACTGGAAGAATCAAGGATCTTATCATTGTTGCTGGAAGAAATGTTTACTCAGCAGATGTTGAAAAGACAGTTGAGACTTCATCTGAATTTCTTCGTCCTGGTTGTTGTGCTGTTGTTGGTGTCCCTGAGGAAATTCTATCAGCAAAGGGGATTTCTATTCCAGATGGCTCTGATCAGGTTGGCTTGGTTGTGATTGCAGAAGTAAGGGATGGTAAACAAGTTAGCAAAGATTTGATTGAGAATATTAAGACATGTGTGGCAGAAGAACATGGAGTTAGTGTTGCTTCTGTCAAGTTGGTCAAGCCTAGAACCATCAGCAAAACAACATCTGGAAAAATCAAAAGATTTGAATGTATCAAACAGTTCACAGATGAGACACTGAACTTGGTACCACTAGGTCAAAAACCTGTTTTCACAAAGAACTCTTTGGTAAGGTCATTTACTACAGCAACATGCAGAGAAGAAAAACCACGCCAGCCCAAGCTAGTGAGAAGTATACCTGCACCTAGTAAAAGGATTAGTAAAAATGACATTGTAGAGTTCTTAAAAGGGCTTATTTCTGAGCAGACTGGAATCCCAATCAACAACATTTCAGTCACAGACAACCTGACATCCTATGGAATTGATTCAATTGGTGTGGTTAAAGCAACTCAAAAACTCTCAGATTTTCTAGGAACTCCAGTTGCAGCTATAGATGTTTTCACTGCATCCTGCATTGTAGAATTGGCTAACTTCTCTGAGGATCTTATATCAAAGGCTCAGCCTCAGCTTTCAAGCAATCCATCCAATGTTCTAGAAGATGAGGTTGATTCTACAGAATTGGTTGTGGAGGTACCCAAGTCTCACCAATTCGGTATTCGTTTACTTCAACTCCTAGCACTTTTTTATATTTCTATAATGCTGGCCTCTCCTGCTTATCTATCCATCACTGCTTTTCTAAATTTCTTCCAAAGTGCCAGCAAATCAATTGATGGAGTTCCCTGGTTAAATTATTTGATTTCCCTTACTTTTGCACCTCTTGCTTGGATTCTTTGCATTGCTTCTACTTGCATCTGCATCTCAATATTTGGAAGTGCTTTCTTGGGGCTAAACTATGCTCTTACCTCTGAAATCTCTATCTATTCAATGGATTTTATTAAATGGTGGGCACTATATAAGACCCGAGAAATTGCCTCTAAAGTTCTTGCAATACACCTCAGAGGAACAGTGTTTCTGAACTACTGGTTTGAGATGTTGGGTGCAAGAGTTGGATCCTCAGTGTTGCTTGATACAGTTGACATCACAGACCCATCTCTGGTGTCAATTGGAGATGAAGCTATCATTGCAGAAGGTGTTTTGGTTCAAAGCCATGAGGTAAAGAATGGAATTTTAAGTTTCCATCCTATAAGGATTGGCAAATATTCTTCTATTGGACCTTATGCTGTTATTCAAAAAGGAAGTGTTATTGGAGAAGGTGCTGAGGTACAGGCGTTGCAAAAAGTTGGAGGAGGCCACCATGTGCTCAAATCTGCTAAGCTTAATAATGTTGATAAGAATGCAGAGCTGCATGTTACTACCAGCAAAACTCAATATGATATCTACCACTTTATGGGGATCTATCTTGTTGGCTTTCTCAGCTCCCTTGCTGGGGCCATTGCCTACTTCTTATATATCAGATTCTCCAAGCAACCTCTATCACTCCAACAATTTTCATTTGTTTGCATATGTGGGGCCTTCCACTGGATCCCATTTACCATCATTGCATATGCAACCATGTTTTCTGATGTCCCATCAAATCCAATCACCTTTGCCATTTCATTTACCAGTGCCTACTTGCTTCATGGTCTCATACTCATCATTCTCACCAGTGCTTTTACTCGTCTCCTCATGTCTAATCAAAAGCAAACCCAATTTAAAACCTGGCTTCGCTATCAAATAACCTCTTCCTGCCATCTTAGATGTGCAAAGCTTCTCTCAGGAACAGAAGCCTTCTGCATATATTTACGCCTTTTGGGTGCAAAAATTGGCAAGCATTGTTCCATTAGAGCTATCAACCCAGTTTCAAATCCAGAGCTATTGTCAATTGGTGAGGGTGTCCATCTTGGAGATTTTAGCCGGATAATTACTGGTTTTCATTCTTCCAATGGATATGCTTGTGGAAAAATTGAGGTTCAAGATAATTCAGTTATTGGGAGTCAAAGCTTGATTCTCCCTGGTTCTCTTGTACAAAAGAATGTCATTCTGGGTGCACTTTCAGTTTCTCCAATGAATTCCATTCTCCGAGAGGGCAGTGTGTACATTGGCTCACAATCTCAAGTTGTTGTCAGGAACTCGGTGAATGCTTCAGATGAGAGGGACATGGAATGCAAGAAAAAAGTTGATAATTTGGCTGCAGCAATATTACCTAAAGAAGACTCACAAAAAGTGACCTTGAGCAGAACATGGTATCAGACCCTCTCAGCACTCTTCATTCAGCCGTTGCTACAAACTGTTTTACCTTATGCCATAGTGGGTTTAGCAGTTTTTGTTCCTTTGAACTGGATTGTTCACCTAAAAAATGCCAAGATACTTCCAATCTATTGGTTGTTTCCTTTGTGTTGGGTTCTCTCGGGTGCTTTAGCTGCATTGGCGTGTGTTATAGCCAAATGGGTTCTTGTGGGAAGGAAGAAAGCAGGTGAAACAGTGCCAATATGGAGTCCAAGGATCATCATGGACAGCACATGGCAGGCCATTAGAACTTTAGTTGGAGATTATTTTATGGACATGACAAGTGGGTCATTTTTGTTTGTCCTATGGATGAAGTTGATGGGCGCAGATGTAGATATGGATGATGCAGTTTATGTAGATAGCATGGGAGCCTTATTAAACCCTGAGATGGTGAAGATTGAAAGAGGGGGTTGTGTAGGAAGAGAAGCCTTGTTGTTTGGACATATATATGAAGGGGAAGGAGGTATGGTAAAGTTTGGAGAGATCAAAATAGGAGAAGATGGGTTTATAGGGAGTAGAGCTGTGGCCATGCCAGGGGTGCAATTGGAGAATGAGGGCAATCTTAGTGCTCTGTCACTTGCCATGAAAGAAGAAATCATTAGATCAAGATAA 5847 0.4058 MDPERSVEDQFSKLHPSLPVNTRIGIVGGGPSGLSAAYALARLGYENVTVLEKHHTVGGMCESVEIQGKVYDLGGQVLAASSAPIIFHLAKETGSALEEMDSHKLAVIDPSSGEYQDIKVVDDYVSVMSLTLEIQEKVKNCGRIGVHAVSDIAADLTPEYLECHGLKSIPKSVAYGYTASGYGFVQDMPYAYLHEFTRTSMAGKIRRFKGGYMSLWQKIAESLPLKLRCNTEVLAIRRNSDGVTVDVKSLDEVETLEFDKIIISGPFPLKYGRIYRSLPSTCIECEKEVMDVSELEKDLFSKVETNDYYTTVLKIKGLEHLPVGFYYISEYMEDPSTIGNPVAMQKYYADTNIFLFWSYGNSVDIKGPTVKELAIKAIEAMGGEVENVILQRCFKYFPHVGSQDMKDGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALMCKNFANSNDLPLFPYTKSLFPLQTECQNKNPKELGELPEVQFPNLPTLNSYLKYWGTHPITQNRTLYTWINEEGSPVCHRTYGEQHFNASCIAHKLLTSQKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVIPVPVLPPDPMQRSGQALMKIENISKSCGIVAILSTVAYHSAVRAGSLKNFISLTGKKGKSSARWPNLPWFHTDTWVKNSKSMVLENLDDQCEPQPGDLCFLQFTSGSTGDAKGVMISHGGLIHNVKLMRSRYKSISRTVLVILFSPMTFIKKPLLWLETISKYQATHSAGPNFAFELVIRRLESDKDKLQNLDLSSLIFLMVAAEPVRQKTLKRFIELTSPFGLSQKVMAPGYGLAENCVFVSCAFGEGKPIIVDWQGRVCCGYFHPEDADVDIRIVDPQTCEELQEDGKEGEIWISSPSAGLGYWGREELSQETFRNELQNHPGRNYTRTGDLGRTIDQKLFITGRIKDLIIVAGRNVYSADVEKTVETSSEFLRPGCCAVVGVPEEILSAKGISIPDGSDQVGLVVIAEVRDGKQVSKDLIENIKTCVAEEHGVSVASVKLVKPRTISKTTSGKIKRFECIKQFTDETLNLVPLGQKPVFTKNSLVRSFTTATCREEKPRQPKLVRSIPAPSKRISKNDIVEFLKGLISEQTGIPINNISVTDNLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTASCIVELANFSEDLISKAQPQLSSNPSNVLEDEVDSTELVVEVPKSHQFGIRLLQLLALFYISIMLASPAYLSITAFLNFFQSASKSIDGVPWLNYLISLTFAPLAWILCIASTCICISIFGSAFLGLNYALTSEISIYSMDFIKWWALYKTREIASKVLAIHLRGTVFLNYWFEMLGARVGSSVLLDTVDITDPSLVSIGDEAIIAEGVLVQSHEVKNGILSFHPIRIGKYSSIGPYAVIQKGSVIGEGAEVQALQKVGGGHHVLKSAKLNNVDKNAELHVTTSKTQYDIYHFMGIYLVGFLSSLAGAIAYFLYIRFSKQPLSLQQFSFVCICGAFHWIPFTIIAYATMFSDVPSNPITFAISFTSAYLLHGLILIILTSAFTRLLMSNQKQTQFKTWLRYQITSSCHLRCAKLLSGTEAFCIYLRLLGAKIGKHCSIRAINPVSNPELLSIGEGVHLGDFSRIITGFHSSNGYACGKIEVQDNSVIGSQSLILPGSLVQKNVILGALSVSPMNSILREGSVYIGSQSQVVVRNSVNASDERDMECKKKVDNLAAAILPKEDSQKVTLSRTWYQTLSALFIQPLLQTVLPYAIVGLAVFVPLNWIVHLKNAKILPIYWLFPLCWVLSGALAALACVIAKWVLVGRKKAGETVPIWSPRIIMDSTWQAIRTLVGDYFMDMTSGSFLFVLWMKLMGADVDMDDAVYVDSMGALLNPEMVKIERGGCVGREALLFGHIYEGEGGMVKFGEIKIGEDGFIGSRAVAMPGVQLENEGNLSALSLAMKEEIIRSR. 1949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03729 1948 Gene3D - 481 927 IPR042099 -
Seca4g03729 1948 Gene3D - 94 202 - -
Seca4g03729 1948 ProSitePatterns Phosphopantetheine attachment site. 1128 1143 IPR006162 -
Seca4g03729 1948 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 720 1683 - -
Seca4g03729 1948 Pfam Phosphopantetheine attachment site 1104 1168 IPR009081 -
Seca4g03729 1948 Gene3D - 1091 1171 IPR036736 -
Seca4g03729 1948 SUPERFAMILY Trimeric LpxA-like enzymes 1323 1420 IPR011004 -
Seca4g03729 1948 SUPERFAMILY Trimeric LpxA-like enzymes 1796 1939 IPR011004 -
Seca4g03729 1948 Gene3D - 928 1054 IPR045851 -
Seca4g03729 1948 Pfam AMP-binding enzyme 524 933 IPR000873 -
Seca4g03729 1948 Pfam Flavin containing amine oxidoreductase 192 267 IPR002937 GO:0016491
Seca4g03729 1948 CDD FAAL 509 1047 IPR040097 GO:0008610
Seca4g03729 1948 Gene3D - 23 445 IPR036188 -
Seca4g03729 1948 Pfam NAD(P)-binding Rossmann-like domain 26 92 - -
Seca4g03729 1948 SUPERFAMILY Trimeric LpxA-like enzymes 1583 1689 IPR011004 -
Seca4g03729 1948 Gene3D Hexapeptide repeat proteins 1319 1423 - -
Seca4g03729 1948 ProSitePatterns Putative AMP-binding domain signature. 680 691 IPR020845 -
Seca4g03729 1948 Gene3D - 303 396 - -
Seca4g03729 1948 PRINTS Adrenodoxin reductase family signature 23 45 - -
Seca4g03729 1948 PRINTS Adrenodoxin reductase family signature 47 60 - -
Seca4g03729 1948 ProSiteProfiles Carrier protein (CP) domain profile. 1099 1173 IPR009081 -
Seca4g03729 1948 SUPERFAMILY FAD/NAD(P)-binding domain 21 274 IPR036188 -
Seca4g03729 1948 SUPERFAMILY ACP-like 1097 1176 IPR036736 -
Seca4g03729 1948 Gene3D Hexapeptide repeat proteins 1562 1716 - -
Seca4g03729 1948 SUPERFAMILY Acetyl-CoA synthetase-like 496 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03729 Seca-Chr4 65294523 65301283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03729 676 1048 Monolignol Biosynthesis Gene Families AT1G20480 26.329 2.81e-16 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03729 - - adu:107477067 2999.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03729 4 65294523 65301283 Seca4g03729 4 65294523 65301283 ECH
Seca4g03729 4 65294523 65301283 Seca4g08949 4 213237326 213246023 PCT