Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03706 ATGGACTCCGAGGATGATATGCACGACGCCAACGACGTTGAGTCCCTCGACGACGATTTCTACAGTGGCGAGACGGATGATGCTGCCATGGACTACTACAGCGACTACGACGACGACGCCGATGATTACTTCGACGATGCCGACAGGGTTGAGTCTCGTCGACCGGAGCAAAATTTTACCATCTTGAAGGAATCCGATATCCGACAAAGACAGGAAGATGACATCGCTAGAGTAGCTGCGGTTCTTTCCATATCAAAAGTTCTTGCAAGTATTCTACTTCGTCACTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTTCGGAAAGCAGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGTATTCTCCTAATGCTAGAGAGCTTACGTGCGGCATCTGTTTTGAAAACTATCCTCGAGCCAGGATTGAAATGGCTTCTTGTGGTCATCCCTATTGTTTCTCATGCTGGGAAGGCTATATCGGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCACTTGTGGTGCCGCTGTTGGTCAAGATATGATTAATCTATTAGCAACCGATGAAGATAGGCAAAAATATGCTCGTTACCTTCTTAGATCTTATATTGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCTCCTGGCTGTGAACATGCTGTCACTTTTGATGCTGGTAGCGGAAATTATGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACAGAGGAGGCTCATCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAATTCAAAGCCTTGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGTTGCATGCACATGACGTGCACTCCACCCTGTAAATATGAATTTTGCTGGCTATGCGTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGTTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAACCTGAGTCACAGCTTAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACGTATGCATATGGGTACTATTTACCTGAACATGAGCATGCAAAAAAGCAGTTCTTTGAGTACCTGCAAGGTTTTATTTTTCAACTTGAGTTTAATTGGAAATCTGTTGTGTTTGTGGTGGTTCTCCCATAA 1431 0.441 MDSEDDMHDANDVESLDDDFYSGETDDAAMDYYSDYDDDADDYFDDADRVESRRPEQNFTILKESDIRQRQEDDIARVAAVLSISKVLASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLEKPVVQYSPNARELTCGICFENYPRARIEMASCGHPYCFSCWEGYIGTSINDGPGCLMLRCPDPTCGAAVGQDMINLLATDEDRQKYARYLLRSYIEDNKKSKWCPAPGCEHAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCVGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGFIFQLEFNWKSVVFVVVLP. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03706 476 CDD Rcat_RBR_ARI7-like 291 345 - -
Seca4g03706 476 Gene3D - 264 464 - -
Seca4g03706 476 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Seca4g03706 476 SUPERFAMILY RING/U-box 287 335 - -
Seca4g03706 476 SUPERFAMILY RING/U-box 207 275 - -
Seca4g03706 476 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g03706 476 SMART ibrneu5 272 342 IPR002867 GO:0008270
Seca4g03706 476 SMART ibrneu5 206 268 IPR002867 GO:0008270
Seca4g03706 476 FunFam RBR-type E3 ubiquitin transferase 269 463 - -
Seca4g03706 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 218 IPR013083 -
Seca4g03706 476 CDD BRcat_RBR_ANKIB1 213 277 - -
Seca4g03706 476 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 434 IPR031127 GO:0004842|GO:0016567
Seca4g03706 476 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Seca4g03706 476 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Seca4g03706 476 Pfam Ariadne domain 355 445 IPR045840 -
Seca4g03706 476 SUPERFAMILY RING/U-box 133 218 - -
Seca4g03706 476 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 GO:0008270
Seca4g03706 476 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03706 Seca-Chr4 64712565 64720536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03706 17 457 ARIADNE family AT1G65430 72.124 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03706 K11968 - gmx:100784195 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03706 4 64712565 64720536 Seca4g03706 4 64712565 64720536 ECH
Seca4g03706 4 64712565 64720536 Seca4g08936 4 212893284 212901215 PCT