Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03693 ATGGGGCACAGTTCGAAGAAGAAGAAACGCGGAGGAGGAAGTGGACGCAGAAGCAAAGGAAGAACACCTTCCAAAGATCACGCTTCTCAATTCCACGCCGATGATAACGACCAACTTTCCGAGGAGATTACTGCATTATGTGCAATTTTCGAAGAGGACTGCAAAGTTCTTCCTGGATCGCCTCCTCAAATAGTTATTAAGCTCAGGCCTTACTCGAAGGACATGGGTTATGAGGACGTAGATGTTTCTGCTGTTCTTGTTGTCAGGTGCTTGCCTGGTTATCCCTTCAAGTGCCCCAAGTTGCAGATTACACCTGAGAAGGGTTTGTCAGAAAGTGATGCTAATAATCTTTTGTCTCTCCTTCAAGATCAGGCTAATTTAAATGCTAGGGAGGGACGGGTAATGATCTTTAATTTGGTTGAGGCTGGTCAAGAATTTTTGTCTGGAATTGAGCCAATTGCCAAGTCAACTGAATCTACACTTTTACACTCAACTACAGAAAGCAATGAAGAATTGTTTCCCAAGGATATGACATCTTCAAATAAGAATAGATCTTTTGTTTACGGTTTCATTGACCTTTTCAGTGGCTATGGAGAGTCCTGGAATTGGGGTTTTGGAATAGATGAAACTGCTGGAAAAAGTTCTTCTCTTCCTCCCTCTAAGTTAGATGCCTCAAAACCATATTTTGATGCCCGGGAAAAGAAATCTGATAGTAAGGAAAAACCGCTCATATTGCAAGAACTTCCTGCCAAATTAGATACTGTTGGAGAAGCCAGTGAAGACAGCAATAATAACTTATCTTTGACTCATTCAAGTACGTCTCTGGAGGGGGGTTTTGTAGGGAAAAACAATGAAGGTGAGAAAGAGTATTTTATTGTTGATGAGTATACAACAGAAGATAATGAGTATGAAAGCGAGTCTTCAGAGTCTTTGTCTTCTGCCTCCTTGCCTCATCACCAAGCATCTCAAACAGTAGAAAAGGATCTAGTAATGGTTCACATGCTTCGACTTGTTTGTGCTTCAAAAGGAACATTGGCTGACTCTTTGCCACAATTAGCAACAGAGCTGTACAACTTAGGGATCTTCTCTGACTTGGCACGTGATATGGCATCTAAACCGCCTTCCCTTTTTAACAAAACCTTTGATCGTACCTTCCAGAAACACTTGGCATCATCGAGAATATCTCAATTTTGGAAACCTTCTTCTGATCTTGGAGGATCTAACACAGTCCCCCATAGTTCTCGATATTTGAATGATTTTGAGGAGCTACGGCCTCTTGGTCATGGTGGTTTTGGTCATGTTGTGTTGTGCAAAAATAAACTCGATGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACACGTTGTTCGGTATTATCAGGCTTGGTTTGAAACTGGAGTTGCAGATTCTTATGGTGATCCTGCTTGGGGTTCAAGGACTCCAGTGAGCTCTACTTTCAGCTTTAAAGGTGCAAGCTCCAATGATGCCATTGGGCATGAGAATCAACTTGAATCAACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTGGAGGGTTTGGCACACATACATGGACAAGGAATAATTCATCGGGACCTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTAGGCCATCCTGCTGATACAGCTGGAGTTTCCATTGATGGCACTGGACAAGTTGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCGAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCTGATCTGAAACTGAAAGGGGAACTTCCACCTACTTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTGCTGCGGCGGTTAATGTCTCCAGGTCCTTCAGATCGCCCTTCAGCTACAGAACTTCTGAGAAATGCATTTCCTCCACGAATGGAGTCTGAATTATTGGATGATATTCTACGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGAACAAAACACATTCGTCAGGTTGGTAGATTGGGGTCAGTTGGAGATAACAGTTCATCCATTCAGTACACAGATTTGGTAACTGAAGTTCGAGATTATGTCGTAGATATCAACAGGGAAATTTTCAAACAGCATTGTGCAAAACATCTAGAAATATCAACAATGCGATTATTGGATGATTCTCCACAATTTAATAGAAATGCAGTTAAACTTCTAACCCATGGAGGAGACATGCTAGAACTTAGCCATGAGCTGCGTTTGCCTTTTTTGAACTGGATTATATCAAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTTTACAGAAGAGCAGTTGGACATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATTGTTGGTGGTACCTCAGCATTGACAGAGGCAGAGGTCATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGCAGACTCATGTGACATTCATCTAAACCATGCTGACCTCCTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACATAGACTTAAAGTAGCAGAGGTATGTTAG 2853 0.4125 MGHSSKKKKRGGGSGRRSKGRTPSKDHASQFHADDNDQLSEEITALCAIFEEDCKVLPGSPPQIVIKLRPYSKDMGYEDVDVSAVLVVRCLPGYPFKCPKLQITPEKGLSESDANNLLSLLQDQANLNAREGRVMIFNLVEAGQEFLSGIEPIAKSTESTLLHSTTESNEELFPKDMTSSNKNRSFVYGFIDLFSGYGESWNWGFGIDETAGKSSSLPPSKLDASKPYFDAREKKSDSKEKPLILQELPAKLDTVGEASEDSNNNLSLTHSSTSLEGGFVGKNNEGEKEYFIVDEYTTEDNEYESESSESLSSASLPHHQASQTVEKDLVMVHMLRLVCASKGTLADSLPQLATELYNLGIFSDLARDMASKPPSLFNKTFDRTFQKHLASSRISQFWKPSSDLGGSNTVPHSSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVADSYGDPAWGSRTPVSSTFSFKGASSNDAIGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADTAGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKLKGELPPTWVAEFPEQESLLRRLMSPGPSDRPSATELLRNAFPPRMESELLDDILRTMQKSEDTSIYDKVLNAIFDEEMLRTKHIRQVGRLGSVGDNSSSIQYTDLVTEVRDYVVDINREIFKQHCAKHLEISTMRLLDDSPQFNRNAVKLLTHGGDMLELSHELRLPFLNWIISNQKSSFKRYEISCVYRRAVGHSSPNRYLQGDFDIVGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHADLLDAIWSWIGVKVEHRLKVAEVC. 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03693 950 Gene3D Transferase(Phosphotransferase) domain 1 539 731 - -
Seca4g03693 950 SUPERFAMILY Class II aaRS and biotin synthetases 784 947 IPR045864 -
Seca4g03693 950 Gene3D Bira Bifunctional Protein; Domain 2 783 950 IPR045864 -
Seca4g03693 950 CDD STKc_EIF2AK4_GCN2_rpt2 413 719 - -
Seca4g03693 950 SUPERFAMILY Protein kinase-like (PK-like) 416 730 IPR011009 -
Seca4g03693 950 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03693 950 SMART RWD2001b 41 150 IPR006575 GO:0005515
Seca4g03693 950 FunFam eIF-2-alpha kinase GCN2 29 157 - -
Seca4g03693 950 MobiDBLite consensus disorder prediction 19 35 - -
Seca4g03693 950 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g03693 950 Gene3D Ubiquitin Conjugating Enzyme 28 156 IPR016135 -
Seca4g03693 950 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Seca4g03693 950 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03693 950 Pfam RWD domain 38 146 IPR006575 GO:0005515
Seca4g03693 950 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Seca4g03693 950 SUPERFAMILY UBC-like 36 147 IPR016135 -
Seca4g03693 950 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Seca4g03693 950 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 63 761 - -
Seca4g03693 950 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Seca4g03693 950 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Seca4g03693 950 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Seca4g03693 950 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03693 Seca-Chr4 64491204 64511103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03693 373 723 MAP Kinase Kinase Kinase AT1G63700 25.895 5.89e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Seca4g03693 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03693 K16196 - gmx:100797996 1613.59