Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03685 ATGTTAAAGAGTTATACACATCATTTGCTAAGAAAGCGAGTTTTGGTATTCGTACTCGTTCAACTAGAGAATTTTTGTATGCTTGTATGTTCTAATGAAGGCAAGCATATAGTCAAGAATGGTGGGGAAGAGAACAAAGAAAAGTGCTCAACTTCAAGAATAGATTGTAAGGCGTCCCTTATTGTCTCAAAAGCATTGAAAAGAAGTAAATGGATTATCAAAAGCTTTGATAATGTTCATAATCATGCCATGATCAGCCCTAAGAGTGTGAGCTATCTTCGATGTCATAAAAAAATGAGCACAGTGGCTAAAAACCTTGTTGAGAAGTTTGATGAAAAAGGGGTACCTACAAGAAAGGTTGCCGCAATGTTTAATGGTGGAGACATATCTTTCTCTAACAGGGATTGCTGGAATCATCTTAGAAATGTTAGAAGAAGAAATCTTGATATTGGAGATGCCCAAGCTGTTTTGAACTTTTGTAAGGAAAAGCAAGCTGAAAATCCAAATTTCTTCTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTTTTTTGGGTAGATGCAAGATCAAGAATGGCGTATAAGAATTTTGGAGATGTCATTACATTTGATACAACATATAGGACCAACAAGTACAACATGTCTTTTGCTCCTTTTACTGGGTTGAATCATCATTGTCAATCCATATTATTTGGTTGTGCTTTATTACAAGATGAGACTGAGAAGACTTTCGAATGGCTATTTCATACTTGGCTCGAGGCAATGGGTGAGGATTTTGAAGAAGACTGGGAGCGTATAATGATTTCTTATGATTTGAAGAAGAATGAATGGCTTCAAGGCTTATACAATATAAGAGATTCATGGGTGCCTGTTTATAACAGGGGAGCTTTTTTTGGTGGGATGAACACTACACAGAGGAGTGAAAGTATGAATGCTTTTTTTGATGGATTTGTTAATTCTTCAACAACACTACGAGATTTTGTAGTGAAGTTTGACAAGGCAATGGATAGTCGCTATGAAAAAGAAAGAAGAGAAGATTTTGAATCCAAGCATCGATCACGACTCTTAGATATTAAATCAAAGATTGAGGAGCATGCTGCATCAATTTATACAAGAGCCATTTTTGGGAAGTTTCATGATGAATTGGCTAAGATTAATCAATTCACAAAAGAGAAGATTGAAAAGAATGGGTCTCAGTATACATACAGGGTATCCAACTGTTTTGACTCTCGAGACACAGTTACGGTTTGTGTGGATCTTGACACAAAGGCTGCTAATTGCAGTTGCCAACTATATGAATTTTTGGGGATTTTATGTAGACATATCTTGGTGATTTTTCAAGCAAAAAATATCATTGAAATTCCAAGTAATTATATTTTAGAGAATTGGACAAAAGACGCTAATAGGGGCATTGGATTTAATGAAAATGGAGCAACTTCTTCATGTGATGCTAATAATTCAACAACTCTGTGA 1479 0.3523 MLKSYTHHLLRKRVLVFVLVQLENFCMLVCSNEGKHIVKNGGEENKEKCSTSRIDCKASLIVSKALKRSKWIIKSFDNVHNHAMISPKSVSYLRCHKKMSTVAKNLVEKFDEKGVPTRKVAAMFNGGDISFSNRDCWNHLRNVRRRNLDIGDAQAVLNFCKEKQAENPNFFYAIQCDDEDRMINFFWVDARSRMAYKNFGDVITFDTTYRTNKYNMSFAPFTGLNHHCQSILFGCALLQDETEKTFEWLFHTWLEAMGEDFEEDWERIMISYDLKKNEWLQGLYNIRDSWVPVYNRGAFFGGMNTTQRSESMNAFFDGFVNSSTTLRDFVVKFDKAMDSRYEKERREDFESKHRSRLLDIKSKIEEHAASIYTRAIFGKFHDELAKINQFTKEKIEKNGSQYTYRVSNCFDSRDTVTVCVDLDTKAANCSCQLYEFLGILCRHILVIFQAKNIIEIPSNYILENWTKDANRGIGFNENGATSSCDANNSTTL. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03685 492 Pfam MULE transposase domain 202 259 IPR018289 -
Seca4g03685 492 Pfam SWIM zinc finger 419 452 IPR007527 GO:0008270
Seca4g03685 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 473 IPR031052 GO:0006355
Seca4g03685 492 SMART 26again6 427 454 IPR006564 GO:0008270
Seca4g03685 492 Pfam FAR1 DNA-binding domain 28 84 IPR004330 -
Seca4g03685 492 ProSiteProfiles Zinc finger SWIM-type profile. 416 452 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03685 Seca-Chr4 64323441 64326036 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03685 MULE 5.1e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03685 - - qlo:115970754 512.686