Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03677 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCGGATGAGGCGGCTTTGTGTGCTAAGTGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAACACCAGAGGCTTCTTCTTCAGTGTCTATCAAACAAGCTTCCCAGATGTGATATATGCCAAGATAAGGCAGCTTTCATATTCTGTGTTGAAGACAGAGCACTCTTCTGTAAGGACTGTGATGAACCAATTCATTCAGCTGGTAGCCTTTCTGCAAACCACCAGCGATTTCTTGCTACTGGTATCCGGGTGGCTTTGGGTTCTAATTGCGCTAAAGGCAATGAAAAAAGTCATGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAATTCCTGCTCAGCAAGTGCCTAGCTTCCCATCCTCTTGGGCTGTTGATGACTTATTGGAATTAACAGACTTTGAATCTCCAGACAAAGTAAGATAG 492 0.4411 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHSAGSLSANHQRFLATGIRVALGSNCAKGNEKSHVEPSNPNAQEVPVKIPAQQVPSFPSSWAVDDLLELTDFESPDKVR. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03677 163 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g03677 163 Gene3D Classic Zinc Finger 1 96 - -
Seca4g03677 163 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 154 - -
Seca4g03677 163 CDD Bbox1_BBX-like 5 47 - -
Seca4g03677 163 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Seca4g03677 163 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Seca4g03677 163 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Seca4g03677 163 SMART bboxneu5 52 99 IPR000315 GO:0008270
Seca4g03677 163 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g03677 163 CDD Bbox1_BBX-like 57 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03677 Seca-Chr4 63562990 63568352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03677 1 162 Orphan Transcription Factor Family AT1G06040 67.456 1.72e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca4g03677 zf-B_box 7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03677 - - gmx:100779183 315.464