Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03670 ATGCCGATTCCAACGAAATCAACGAGGCCGGCTCAGGAAGGCGGCAGGGACTCCGACGAGTCTGCGGCGACTCCGTCGAACAACCTATGGGTCGGGAATCTGGCGACGGACGTTTCGGACTCCGATCTTATGGACCTGTTCGCTCAATACGGCGCCCTCGACAGCGTCACCTCCTATTCCGCTCGCAGTTACGCCTTCGTGTTCTTCAAGCGCGTCGAAGATGCCAAGGCTGCTAAGAACGCTCTCCAAGGCTTCTCTCTCCGTGGCAGTTCCTTGAAAATTGAGTTTGCCAGACCGGCAAAGCCATGTAAGCAACTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGAATTCAAGTTCTTCAGAGACCGAAATACTGCATGTGTTGAATTTATCAATCTGGACGATGCTGCTCAGGCAATGAAAATCATGAATGGGAAACGTATAGGTGGGGAGCATATTCGTGTTGACTTCCTCCGGTCACATTCTACAAAAAAATTTCAAGGTAAAAGCTTGGGGCCTACTGATTCCTATTCTGGACAGAAAAGACCATTGCATTCACAAACTTTGATGGGGAGAAAGGGCGATGGTCAACCCAGTAATATTTTATGGATTGGTTATCCTCCTGGTGTTCAAATTGATGAGCAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGGAACTATTCATTTGTTGAATTTAGAAGTATTGATGAAGCTCGACGAGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGACCTGGTACCTGGCAAAGATTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGACGTATTCCTGAATGAGCATCCATTCCCACCATTACAAATGGATTTGTTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCATCTAGCGGTATTGTTAGCCCAAACACACCGATGCGGCCTTTTGGGCCTCAAGGTGGTCTTGAATCTGTTGTTTCTGGCCCTGAGTTTAATGAGATCAGCTCCACGGGTAAGATGGGTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCGGGTGTTAGGCTTCCTACAAGGTCAGCCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATCCTAAACGGTCAAGGATAGATGGTACTTTGCCTGTTGATCATGCTGCATTTCCTTTAAGGAACATAGATGAACGTGCGTTAGCTCTGGAACAAACATATGGGATTGATCCAGTTATTGATGGAGGTGTTTCTGGTCCATATGTAAACATTCAAGGAAAGAATCACCTTGGTCCAGCGAACACAAGGATTACAGCTGGAGTACATGGTTCTGTCCAAGCTGATGTTGATCATATATGGCGTGGAATTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTTCCTATTGGGAAAGGGATTGGGACTGAGCTTCCTGATGTTGTTGATTGTTCAGCTAGGACGGGATTGGATATACTCACGAAACACTATGCTGATGCAATTGGTTTTGACATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCTAAATTTGTTGATAACACCACCTTATTCTTGGTACCTCCTTCTGATTTTCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCCATGCAACAGTCATCACATTTGCCTATACCGACAACTCAGTATATGCAGCAGATTCCTCCTTCACAGGCTGAATATGGTATGATTCCTGCAAAGGAGGAACGGATTTCGCCAATGGATTACAACAGGTCATTGCATGAGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCAGCTACAGGTGGCCCCCCTTCAGTTCAGTCTGTGCCTCCAGATTATGCTCCTAATACTACTGCTTCTGGGTCCCAAGCTGGAATTGGATTAACACCTGAGCTTATTGCAACTTTAACTTCTTTACTACCTGCCACCGCACAATCATCTGCCACTGATGGTGCCAAATCAGCAGTAGGTTCCTCGACTGTAAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAATTATGGAAACAGGATCATCAAATTGCAGATCAGTCCATTCATCCTCCTCAACAGTTGAGGAATATGTATAACATTAACAATGCTCATTATCAGTCTTATCCACCAACATCAGCTCCTGGTCACACTGCTCAAGTGGTCTCTGGCAGTTCTCATATACAAGACCATGCTGTCAGCCTGCAGCAGCAAGGTGCTGTTTCATCTAGACACATGTCTAATTTCGTCATACCAACTCAAAGTGGACAGGTAGCTGGATCCCCCCATGTCAATCAGCAGTATCAGGTTGAAGTCTCACCTAGTACTCAGAAAAGTTTTGGAGTGGTGCAAGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTCTCCAGCAACTCAATAACAATTCTCAGCCTTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACAATCTGGCATGCCATATACACTGGACCACCAAATAAACCCAGACCCGCATAATCAGCAACTTCCTGTCTTTGGAGTAGGTCAAGGGACATCAGAAGTTGAGGCTGATAAGAATCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCTTCCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACACGGGCCAGGAGTTCAACAATGA 2973 0.4487 MPIPTKSTRPAQEGGRDSDESAATPSNNLWVGNLATDVSDSDLMDLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFSLRGSSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFRKFGKIEEFKFFRDRNTACVEFINLDDAAQAMKIMNGKRIGGEHIRVDFLRSHSTKKFQGKSLGPTDSYSGQKRPLHSQTLMGRKGDGQPSNILWIGYPPGVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDLVPGKDYPGFYPGSNGPRPDVFLNEHPFPPLQMDLFGHNRPMVPNNFPGQLPSSGIVSPNTPMRPFGPQGGLESVVSGPEFNEISSTGKMGPNWKRPSPPAPGMLSSPAPGVRLPTRSASGAWDVLDINHIPRDPKRSRIDGTLPVDHAAFPLRNIDERALALEQTYGIDPVIDGGVSGPYVNIQGKNHLGPANTRITAGVHGSVQADVDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVVDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFPPVPSSAPMQQSSHLPIPTTQYMQQIPPSQAEYGMIPAKEERISPMDYNRSLHEDSKLPAKPVYPATGGPPSVQSVPPDYAPNTTASGSQAGIGLTPELIATLTSLLPATAQSSATDGAKSAVGSSTVKPPFPPVAPNDGNQSQLWKQDHQIADQSIHPPQQLRNMYNINNAHYQSYPPTSAPGHTAQVVSGSSHIQDHAVSLQQQGAVSSRHMSNFVIPTQSGQVAGSPHVNQQYQVEVSPSTQKSFGVVQGTDASVLYNSQALQQLNNNSQPFQQPNNSIALSNQVNSANPSQQQSGMPYTLDHQINPDPHNQQLPVFGVGQGTSEVEADKNQRYQSTLQFAANLLFQIQQQQQTQGGHGPGVQQ. 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03670 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Seca4g03670 990 MobiDBLite consensus disorder prediction 181 209 - -
Seca4g03670 990 MobiDBLite consensus disorder prediction 740 773 - -
Seca4g03670 990 FunFam Flowering time control protein FPA 19 101 - -
Seca4g03670 990 SMART rrm1_1 28 95 IPR000504 GO:0003723
Seca4g03670 990 SMART rrm1_1 105 172 IPR000504 GO:0003723
Seca4g03670 990 SMART rrm1_1 217 285 IPR000504 GO:0003723
Seca4g03670 990 MobiDBLite consensus disorder prediction 678 712 - -
Seca4g03670 990 CDD RRM_SF 29 95 - -
Seca4g03670 990 Pfam SPOC domain 498 616 IPR012921 -
Seca4g03670 990 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Seca4g03670 990 Gene3D - 103 209 IPR012677 -
Seca4g03670 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 92 IPR000504 GO:0003723
Seca4g03670 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Seca4g03670 990 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Seca4g03670 990 PANTHER RNA RECOGNITION MOTIF-CONTAINING 25 97 - -
Seca4g03670 990 SUPERFAMILY RNA-binding domain, RBD 101 197 IPR035979 GO:0003676
Seca4g03670 990 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g03670 990 Gene3D - 210 293 IPR012677 -
Seca4g03670 990 MobiDBLite consensus disorder prediction 795 816 - -
Seca4g03670 990 Gene3D - 4 102 IPR012677 -
Seca4g03670 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 289 IPR000504 GO:0003723
Seca4g03670 990 MobiDBLite consensus disorder prediction 181 201 - -
Seca4g03670 990 CDD RRM_SF 106 172 - -
Seca4g03670 990 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Seca4g03670 990 FunFam flowering time control protein FPA 209 302 - -
Seca4g03670 990 SUPERFAMILY RNA-binding domain, RBD 211 295 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03670 Seca-Chr4 63425435 63433593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03670 28 279 Eukaryotic Initiation Factors Gene Family AT2G23350 24.296 3.72e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03670 - - gmx:100777570 1637.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03670 4 63425435 63433593 Seca4g03670 4 63425435 63433593 ECH
Seca4g03670 4 63425435 63433593 Seca4g08890 4 212140176 212141387 PCT