Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03663 ATGGTTTCAGTCCTCAAATTTCGTACCATCTTCTACACACTAGAAGCCACAAGTCGACAAATATATGGTGCCCTTAGATATTTTCATTCTGGGTCTGAATGGGTTCACAAGGGTTTGGATAAAAATCTAAACTTGGCACCAAACGAAAAGCAAAAGAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAACTCAATCCCCCCTTATGAAGTTGCCAATAAACTGAGAATAGCTGCATCTTCCTTTGGGGTTGTTCGGTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCCCAAGTTGTTAAGGAGAGGAGGAAAGAGAGGGCACTGTTGAATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAGCCTTATCTTTGTAGGGTTTGTGGGAGAAAATTTTATACTAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGTGAGCACATAAAAAGGATGAACCAGATAGAGTCAGCTAAAGGGAACAGGAAGGTGAAGTTGGTGGCTAAGTATTCCATGAAAATGGAAAAGTATAAGAAGGCTGCAAATGCTGTTCTGACTCCTAAAGTGGGGTATGGTTTGGCAGATGAACTAAAACGGGCAGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCACAAGCTGCAGATCGTGCATTGCAAAATCACATGGTGGATATCATGGATCATAGGAGGGTTGAGTGTCTGGTACTTGTATCTGATGATTCTGATTTTGTTGATGTAATAAAGGAAGCAAAGCTACGGTGTCTCAAGACGGTTGTCATTGGTGATACTACTGATGATGGAGTCCTGAAGAGGACTGCTGATGCTGCATTTTCTTGGGAGGAAATTCTGATGGGGAAGGCCAAAAAAGAGGCTGTATCAGTTGTGGAAAACTGGAAGGATCGTGATATCTTAAAAAGGTTAGAGTGGACATACAACCCAGAAGTAGATAAAAAGAAATTCAATCTGAATGATAAGGTTACTGAAACATCTGAAGATGAAGATATGGAAGATATCTGTGATGAAGTTGATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTATGACAATGTCACAACTAGAGGCAAGTTATCCATTGTATCTGTGAGTAGGTGA 1155 0.413 MVSVLKFRTIFYTLEATSRQIYGALRYFHSGSEWVHKGLDKNLNLAPNEKQKRVGLFWDLDNKPPNSIPPYEVANKLRIAASSFGVVRYMVAYANSHTFSHVPQVVKERRKERALLNRLENKGVIKPNEPYLCRVCGRKFYTNEKLVNHFKQLHEREHIKRMNQIESAKGNRKVKLVAKYSMKMEKYKKAANAVLTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQNHMVDIMDHRRVECLVLVSDDSDFVDVIKEAKLRCLKTVVIGDTTDDGVLKRTADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKFNLNDKVTETSEDEDMEDICDEVDDDYKDDRGSWWELDYDNVTTRGKLSIVSVSR. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03663 384 SUPERFAMILY beta-beta-alpha zinc fingers 127 157 IPR036236 -
Seca4g03663 384 Gene3D - 44 293 - -
Seca4g03663 384 Pfam NYN domain 204 284 IPR021139 GO:0004540
Seca4g03663 384 CDD PIN_LabA-like 141 272 - -
Seca4g03663 384 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 46 371 - -
Seca4g03663 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
Seca4g03663 384 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03663 Seca-Chr4 63368994 63376635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03663 48 370 C2H2 Transcription Factor Family AT4G12240 61.078 2.98e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g03663 NYN 6.9e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03663 - - lja:Lj3g3v3326020.1 635.18