Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03659 ATGGACATAATAAGTCTTTACATGGCAAAGAAAACACACTACAACATCTTCTCCAATCAGCAGTATATTGGTCATGAAGCAGCAGCTATGGACATGCACCACAACAACCATCCCCAAAATAGTCACACATCCACAAGCCATACTTCAGACTCCAGTGAGCCTTGTGAGAATGGTAAATGGGCTTCCAAGCTTCTTAGAGAGTGTGCCAGAGCAATCTCTGATAGGGACTCTGCCAAAATTCACCATCTTTTATGGATGTTAAATGAGCTTGCTTCCCCCTATGGAGACTGTGAACAAAAATTAGCCTCCTACTTCTTGCAAGCTCTGTTTTGTAAGGCCACATGCTCTGGCCAAAGGTCCTACAAGACCCTAACCTCAGTGGCTGAGAAAAGCCACTCCTTTGATGCAGCTAGAAAGTTAATACTCAAGTTTCAAGAGGTTAGTCCTTGGACAACTTTTGGACATGTGGCTTCAAATGGTGCCATTTTGGAAGCCTTAGAAGGGGAGACTAAACTCATCCACATAATTGATCTAAGCAACACCCTTTGCACTCAGTGGCCTACTCTGCTGGAAGCCTTGGCTACAAGAAATGATATTGAAACCCCTCACTTGAAGCTCACTGTTGTTGCTTTAACTGGTAGCATAGTAGGATCTGTTATGAAGCAAGTTGGTCAAAGAATGGAGAAGTTTGCTAGGCTTATGGGGGTGCCCTTTGAGTTTAATGCAATATATGGGGTAGATCATCTAGGGGGGCTAACAAAAGAAAGGTTGGGAGTTCAAGAGGGGGAGAGTATTGTTGTGAATTGTGTTGGGACACTGAGAAGAGTGAAAGAGGAAAAGAGGGGAACAGTGATTGGCATGTTGAAATCACTTAATCCTAGAGTTGTGACAGTTGTTGAGGAGGAAGCTGACTTTTGTAGCTCAAAAAATGACTTTGTCAAAAGCTTTGAAGAGTGTCTAAGGTTTTACACACTTTACTTTGAGATGTTAGAGGAGAGCTTCCCCCCAATAAGTAATGAGCAATTGATGCTAGAGAGGGAGTGCTCAAAAAGCATACTTGGGGTTTTAGCTTGTAGTGGTGATGAATTAGTAGGAGATCATGATGGTGAGAGAAGGGAGAGAGGGATCCAGTGGAGTAGGAGGCTTAAAGAGGAGGCATTTTCTCCAGTTGGGTTCAGTGATGATGTTGTGGATGATGTGAAGGCATTGCTTAAGAGGTACCATACAGGGTGGTCACTTGTGGTGCCGCAAGGAGATGATTATCTCTCAGGACTTTACTTGACATGGAAGGAGGAACCTGTAGTTTGGGCATCAGCATGGAAACCGTAA 1329 0.4372 MDIISLYMAKKTHYNIFSNQQYIGHEAAAMDMHHNNHPQNSHTSTSHTSDSSEPCENGKWASKLLRECARAISDRDSAKIHHLLWMLNELASPYGDCEQKLASYFLQALFCKATCSGQRSYKTLTSVAEKSHSFDAARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLIHIIDLSNTLCTQWPTLLEALATRNDIETPHLKLTVVALTGSIVGSVMKQVGQRMEKFARLMGVPFEFNAIYGVDHLGGLTKERLGVQEGESIVVNCVGTLRRVKEEKRGTVIGMLKSLNPRVVTVVEEEADFCSSKNDFVKSFEECLRFYTLYFEMLEESFPPISNEQLMLERECSKSILGVLACSGDELVGDHDGERRERGIQWSRRLKEEAFSPVGFSDDVVDDVKALLKRYHTGWSLVVPQGDDYLSGLYLTWKEEPVVWASAWKP. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03659 442 MobiDBLite consensus disorder prediction 34 55 - -
Seca4g03659 442 ProSiteProfiles GRAS family profile. 52 441 IPR005202 -
Seca4g03659 442 Pfam GRAS domain family 63 441 IPR005202 -
Seca4g03659 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 431 IPR005202 -
Seca4g03659 442 MobiDBLite consensus disorder prediction 33 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03659 Seca-Chr4 63281039 63282367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03659 34 442 GRAS Transcription Factor Family AT4G37650 51.294 7.26e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g03659 GRAS 4.6e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03659 - - csin:114310015 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11669 4 256589254 256590924 Seca4g03659 4 63281039 63282367 PCT