Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03652 ATGGAAGACCACCTTTCCCCTAAGGGAAAAGGAATTAGCTATTGGACACCGTTGGATGGTGGAATGAAAAATTCAGCCTCAGAGGATATGTTTAACAACTTCTCCGAGCTCATGAACTTTGATAACTATGCTGGTTGGTGCAATGGCTCATCGATGACTGATCAGATTCTGGCTAACGGGCTTTCATCATTTGCCTCAGCACCATATCCACCATCTGATGGATTGAATTTGATGGAACAGAGCAATAGTCCATTCTTTATGACAGAAGTTAGTGGAAATTACAATGCTATGGTAAGCTCCCCCAGTTATGGGGAGAGAGTTGTATTACAGCAAATGGAATCCCAACTTGGGTTCTCAGATGATGCAAATGATACAAATAACTTAGATTCAAAACAAAAACAAAATGGCTCATTTCAACAACTTAATTCCTCAGAAGTGGGCAATTATATCATTCCCAGGCCATTTGGTTGGTCCCTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATGAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGACCATAAGCTTGCAGGGTATCGTGAAGTGTCAAGGACATTTACATTTTCTGCAGAAGGAAAAGGAGGCTCTTGTCCAGGGCTTCCGGGTCGCGTGTTTATCTCCCATGTTCCTGAATGGACCTCCAATGTTGGTTACTACCATAAAACTGAGTACTTGAGGTTGGAGCATGCAATTAATCATGAGGTTCGTGGATCAATTGCTCTTCCCATATCTGATCCGCACTCTGAACTGCCATGTAGTGCTGTACTGGAACTTATCACAACAAAGGAAAAGCCTGATTTTGACAGGGAATTAGAAATTGTTTCTAATGCACTCCAGCATGTAAATTTAAGGACTATTATGCCTCCACGACTTCTTCCCCAGTGGCTATCAAATAACAAAAAAGCTGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAGGAGATGAAACTGGGAGAATAAGAATTAAAGAGGGTCATACAAGTTCTAATGAAAAATGCGTGCTATGTATTGAAGAATCAGCTTGCTATATAAATGATAAAGAGGTAGGAGGATTTGTTCATGCATGCGCTGAACATCATCTTGAGGAAGGGCAAGGTTTAGCTGGTAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGGCTTATGATATCAGTGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCGGTTGCAATTAGGCTAAGGAGTACATACACTAATGATGATGATTACATATTAGAATTCTTTCTACCTGTCAATATGACAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTATCAGGTACTATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTAACAGGAATAGAAGCCTCCCAAGTTGGGTTTCAAAAGGAAAAAGTTTTAGGTTTTCTTCCTATGTCCAGTAGAAACTCTCAGATAGTATTCACAAGGGGTGACCATGATTCAGTCCAGGAAATGTCCTTGAAGGCAACTAACCTGAGAAATAATGGAATTGGAGCTGCTCATAGCCAGGAAATGAATGGATCAAGAAAGCAGGTTGAAAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCAGCGAAAAGCATTGGAGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAAATTAATAAAGTAAATCGTTCATTAAAGAAAATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGCTGAAGTTTGATCCTTATACTGGGGAGTTTGTGGCAGGAGGATCAATCATCCAAGAAGTTGATGCACATAAAAGTCTTCTGTTCCCTGAGAAAACTGCTGTGAAAGACCCTAAGCCTGTAACACAAGAAACAGTCTCAGTACCTCCAGCACATGGTAATGCAGGTGAGAATTCAGCCATTAAGTTGGAGGAGGATGGTGCTTGTTTGGTAGGGAACCAGCTTGTGCACTCAAGAAGTGTGCTTGTCTCTAATCCCTGTGAAGGAGAATTGAAAAAAGACAATGCTTCTTCTGTTGATTGTAGTGAAGATTCAAAATCAATGGCCATGGATGATGGATCATGCCACACAACTTGTCTTGGGACCAAGGCTCAGGATTGTCCTAAACAAACCTCTCTGGAGGGGGATCAATGGGTTCTGAACAAGAGCAGTTCTGGAGTAGAAAATTCTACCCGTGATATTGTCTCTAATAGTTCAATCTCCTTGATTGAACTTGGACTGAATAGGGGAAGTGATGCTGAACACAACCACCCTACTTCTTCAGGCATGACAGACTCAACCAATGAATCTGGCTCAATGATGCATGGCAGTTCATCAGGCTCTCAGAGTCACAGCTTTGAGAACCAGAAGCACTCGAAAATAAAATCAGCTTGTGTTGATAGTGGGTCAAAAATTGTTGTCAAAGCTACCTATGGAGGAGATACTATTCGTTTCAAGTTTGATCCATCTGCGGGTTGTTTCCATCTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCAAGAATGTGTTGAAATTTTGGGTGATATTGGCACACATTGTGTGAAGTTTCTTGTTCGTGACATGCCTAGCGTTTTAAGGAGCCGTGGCAGTAACAACTGCTTCTTATCAGACAGCTCATAG 2955 0.4135 MEDHLSPKGKGISYWTPLDGGMKNSASEDMFNNFSELMNFDNYAGWCNGSSMTDQILANGLSSFASAPYPPSDGLNLMEQSNSPFFMTEVSGNYNAMVSSPSYGERVVLQQMESQLGFSDDANDTNNLDSKQKQNGSFQQLNSSEVGNYIIPRPFGWSLDERMLRALSFFKESAGGGILAQVWVPMKHGDEFILSTSEQPYLLDHKLAGYREVSRTFTFSAEGKGGSCPGLPGRVFISHVPEWTSNVGYYHKTEYLRLEHAINHEVRGSIALPISDPHSELPCSAVLELITTKEKPDFDRELEIVSNALQHVNLRTIMPPRLLPQWLSNNKKAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGIGDETGRIRIKEGHTSSNEKCVLCIEESACYINDKEVGGFVHACAEHHLEEGQGLAGKALQSNHPFFYTDVKAYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMQRICRSLRTVSDAELTGIEASQVGFQKEKVLGFLPMSSRNSQIVFTRGDHDSVQEMSLKATNLRNNGIGAAHSQEMNGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGEFVAGGSIIQEVDAHKSLLFPEKTAVKDPKPVTQETVSVPPAHGNAGENSAIKLEEDGACLVGNQLVHSRSVLVSNPCEGELKKDNASSVDCSEDSKSMAMDDGSCHTTCLGTKAQDCPKQTSLEGDQWVLNKSSSGVENSTRDIVSNSSISLIELGLNRGSDAEHNHPTSSGMTDSTNESGSMMHGSSSGSQSHSFENQKHSKIKSACVDSGSKIVVKATYGGDTIRFKFDPSAGCFHLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECVEILGDIGTHCVKFLVRDMPSVLRSRGSNNCFLSDSS. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03652 984 Gene3D - 880 960 - -
Seca4g03652 984 ProSiteProfiles RWP-RK domain profile. 573 661 IPR003035 -
Seca4g03652 984 SMART PB1_new 884 966 IPR000270 GO:0005515
Seca4g03652 984 SUPERFAMILY CAD & PB1 domains 880 968 - -
Seca4g03652 984 PANTHER PROTEIN NLP8 99 974 IPR045012 GO:0003700
Seca4g03652 984 Pfam PB1 domain 886 965 IPR000270 GO:0005515
Seca4g03652 984 ProSiteProfiles PB1 domain profile. 884 966 IPR000270 GO:0005515
Seca4g03652 984 CDD PB1_NLP 887 965 IPR034891 -
Seca4g03652 984 Pfam RWP-RK domain 593 641 IPR003035 -
Seca4g03652 984 MobiDBLite consensus disorder prediction 830 866 - -
Seca4g03652 984 MobiDBLite consensus disorder prediction 833 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03652 Seca-Chr4 63108697 63114906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03652 1 980 NLP Transcription Factor Family AT2G43500 48.678 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca4g03652 PB1 5.5e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03652 - - aprc:113864503 1561.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03652 4 63108697 63114906 Seca4g03652 4 63108697 63114906 ECH
Seca4g03652 4 63108697 63114906 Seca4g08873 4 211717985 211725475 PCT