Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03644 ATGGGTAACTCATTGCAATCACTACATAGACATCGGGAAGAGGATGAGGGCGTTAATGCCATTGAAGAACAGCTAATTAGAGAGGGAACGTGTGAAATCTGCATTGAACTCTTCACTCCAGAAACACTTTTTCAGAATAACAATCTATGTGTGCATCCTTTTTGTGTGGAATGCATAGCCACATATATAGAGACTAAAATAGGCGAGAATGTGGGGAAAATCCCATGCCCTGCCCTGGACTGCGAAAACCAACTGGATCCTGTGTTTTGTAGTTCAATCATCTCAAAACAGTTGTTTGATAAATGGTGCGATGCTCTTTGCAATTCAGCAGTTTTAGAGATCCAAAACCGAACATATTGCCCGAATCAACTTTGCTCTGCCTTGGTTATCAACGAATGTGATGACAAATCCGTGAAAGAAGTTATGTGTCCCAATTGCAAGCAGTATTTCTGCTTCAAGTGCCAAATTCCTTGGCATACAGGGTATAGATGCCATGAGGTTGGACAGTTCAGGGATAGGAATGATGTTCTGTTTGGGCAATTAGCAGAGAGAAGGAGATGGAGTAGATGTTATAGATGTGGTGAATGTCTTGAGCGTGCTGGAGGTTGCAGAGTGATTCATTGCAGATGTGGTGCCTATCATTGTTTTGAATGTGGAAGACCTGCTCATTTTGGTCCTTGCAGAATCAACAACGTAATACTACAGATCCGTACATGGCAGATTATTATTTTAGTAGGGTTTTTCACAATGATTTTGACAATAATTGGGTGGACAATTTTATATTTTATCTAG 792 0.4066 MGNSLQSLHRHREEDEGVNAIEEQLIREGTCEICIELFTPETLFQNNNLCVHPFCVECIATYIETKIGENVGKIPCPALDCENQLDPVFCSSIISKQLFDKWCDALCNSAVLEIQNRTYCPNQLCSALVINECDDKSVKEVMCPNCKQYFCFKCQIPWHTGYRCHEVGQFRDRNDVLFGQLAERRRWSRCYRCGECLERAGGCRVIHCRCGAYHCFECGRPAHFGPCRINNVILQIRTWQIIILVGFFTMILTIIGWTILYFI. 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03644 263 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Seca4g03644 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 113 IPR013083 -
Seca4g03644 263 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 223 IPR031127 GO:0004842|GO:0016567
Seca4g03644 263 SUPERFAMILY RING/U-box 100 167 - -
Seca4g03644 263 ProSiteProfiles TRIAD supradomain profile. 27 240 IPR044066 -
Seca4g03644 263 SMART ibrneu5 100 164 IPR002867 GO:0008270
Seca4g03644 263 ProSiteProfiles Zinc finger RING-type profile. 31 77 IPR001841 -
Seca4g03644 263 SUPERFAMILY RING/U-box 174 224 - -
Seca4g03644 263 Pfam IBR domain, a half RING-finger domain 101 164 IPR002867 GO:0008270
Seca4g03644 263 FunFam RBR-type E3 ubiquitin transferase 26 113 - -
Seca4g03644 263 SUPERFAMILY RING/U-box 29 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03644 Seca-Chr4 63023392 63024382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03644 30 221 C3H Transcription Factor Family AT2G19610 25.980 3.36e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03644 K11975 - pop:18104531 267.7