Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03631 ATGGATGAACAGCAATCCTTCTTCACTATCATCAGGGAAGGCTTGAACACCAAGCACATGAAAGTGCCACCAGAGTTTCATAAGTATTTGGATGAAGAGTTCATGATGATGTCTTGGAGGAAAGCAATTCTTTCATGCCCTTCTAATGAGCAGTGGGAAGTAACTGTTTTGAAGAAAGGAAATGACATTTATATAGAAGATGGTTGGGCAAAATTTCTGATGGACAACTTAGTGGCCATGGATGAGTTCTTGCTATTCACCTATAATGGAGAGAACCACTTCCAGGTGCAAATTTTTGGTAAGGATGGATGTGAGAGAGTAAACTTCAGACAACAAGCACAAAATGACACCCCCACCTCGGCGAGGAAAAAGAAAGATATGACTGATCCCAGCAACAATGGCTCACTTCCTAAGGCTTACTTCTCAAAGCCCCAGGTTTCACCTGAAATTGAAAAACTAGCTCAGTCTTTTACCTCTGACAATCCATATTTCACCCACTTCATGACAAAATCAAATGTGGAAAATCCGTTCGTAATGCCTGTTGCTACTAAGTTTGCGAGAAGGTATATTTCTGAAGCGGTAAAAACGATCATCCTTGAGAATTCGGAAGGAAAATATTGGGAAGTGGGAGTGGGTTGTATAGGTACTCCAAACAAAAGGTATTTTCAGTTTACAAGAGGATGGGAAAAATTTGTTCGTGGAAACAAGCTCAAGATAGGTGACCTTTGCATATTTGAACTTATAGGCGGAAACTATATCAGGGTTCACATTTTCAGATCATGTGCACCAAATTAA 795 0.4013 MDEQQSFFTIIREGLNTKHMKVPPEFHKYLDEEFMMMSWRKAILSCPSNEQWEVTVLKKGNDIYIEDGWAKFLMDNLVAMDEFLLFTYNGENHFQVQIFGKDGCERVNFRQQAQNDTPTSARKKKDMTDPSNNGSLPKAYFSKPQVSPEIEKLAQSFTSDNPYFTHFMTKSNVENPFVMPVATKFARRYISEAVKTIILENSEGKYWEVGVGCIGTPNKRYFQFTRGWEKFVRGNKLKIGDLCIFELIGGNYIRVHIFRSCAPN. 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03631 264 SUPERFAMILY DNA-binding pseudobarrel domain 157 259 IPR015300 -
Seca4g03631 264 Gene3D - 1 104 IPR015300 -
Seca4g03631 264 Pfam B3 DNA binding domain 164 259 IPR003340 GO:0003677
Seca4g03631 264 Pfam B3 DNA binding domain 16 101 IPR003340 GO:0003677
Seca4g03631 264 MobiDBLite consensus disorder prediction 111 141 - -
Seca4g03631 264 CDD B3_DNA 162 259 IPR003340 GO:0003677
Seca4g03631 264 Gene3D - 145 261 IPR015300 -
Seca4g03631 264 ProSiteProfiles B3 DNA-binding domain profile. 164 261 IPR003340 GO:0003677
Seca4g03631 264 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 20 260 IPR044837 -
Seca4g03631 264 SMART B3_2 7 102 IPR003340 GO:0003677
Seca4g03631 264 SMART B3_2 164 261 IPR003340 GO:0003677
Seca4g03631 264 ProSiteProfiles B3 DNA-binding domain profile. 5 102 IPR003340 GO:0003677
Seca4g03631 264 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Seca4g03631 264 CDD B3_DNA 6 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03631 Seca-Chr4 62806287 62808302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03631 7 262 REM Transcription Factor Family AT4G31640 25.379 1.18e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03631 B3 2.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03631 - - aprc:113865156 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03631 4 62806287 62808302 Seca4g03631 4 62806287 62808302 ECH