Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03630 ATGCCGCGCCCTTCTTTCCACAAGCTTGTTCTACCCTCTACTCTCCAAGCCAAGCAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGAGGGTGAGCTTTCTGCCATGGCTACCCTTTCTGTTCCTGATGGCAGTGTCTGGCGTGTAGGATTAAAGAAGGCAGACAACAAATTTTGGTTCCTTGATGGCTGGCAAGACTTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTGTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATATTTTTAATTTGGCTACATCTGAGATAAACTATATAACCACCACACAAAGCAGTAATGAAGGACCTTACTTTGGAAGTCGTCTTAAGATTTTTGAAGAAATGGAAGATGAAGATTCCATTGAAACCTTGGATTCGTCACCTTCCCACCTTACTCCTGGTACATTGCAAGACAAAGCTATTTCTGGATCAGTAGATAATTTGACACCTGGCAAGAATTGTTCGCCTCCAGCATCGCAGAATCTGTTTAATGGATCTAAACTTAATAACATAAACTGGGGAGAGGGTGGGAATGCCCTTTCTTCAAAAAGTGCCAATTCACTAGAAAATCAGCTGACCAAAAATATAGGTGTCCAATTTAATGCAGCTGAGTATAAAAGATCTACTGAAGAATTGAAATTGCGTGCATCTATGGAGGAAAAGGCTAAAAAAGCTGCGATAAAGAAGCGGAAATCAGGAATTTGTGTAAGTGCAGATGACCAGGAAGCTTCTGCTGAAAATGAAGAAGAGGTGGAAATGCGCTATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACTGTGACAGAGGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCATCCTATTTATACAGAGGATGCATAATGTATTTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGAGGTTTCAGGATTTATTAAACTTCAAATCTCTGATGGGAGAGAGTGGCCTGTTCGCTGCCTTTATAGAGGAGGTAGAGCTAAGTTAAGCCAGGGTTGGTTTGAATTTGCATTAGAGAACAATTTAGGTGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAAAGTGAAAGATGTAGTGCTGCAAGTTACTATTTTTCGTGTCACTGAGGATGTGGGATTGTCGAGCCCTCCTTCACAGAAGAACCAAAATGTGAGCTCAGCAAAAATGTCAAACACTCCCTTGCAGCATGACCATACTTCAACTTAA 1293 0.4114 MPRPSFHKLVLPSTLQAKQLRLPDNFMRKYEGELSAMATLSVPDGSVWRVGLKKADNKFWFLDGWQDFVQRYSIGVGYLLVFRYEGKSSFNVHIFNLATSEINYITTTQSSNEGPYFGSRLKIFEEMEDEDSIETLDSSPSHLTPGTLQDKAISGSVDNLTPGKNCSPPASQNLFNGSKLNNINWGEGGNALSSKSANSLENQLTKNIGVQFNAAEYKRSTEELKLRASMEEKAKKAAIKKRKSGICVSADDQEASAENEEEVEMRYRFYESASARKRTVTEEEREKAVNAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNEVSGFIKLQISDGREWPVRCLYRGGRAKLSQGWFEFALENNLGEGDVCVFELLKVKDVVLQVTIFRVTEDVGLSSPPSQKNQNVSSAKMSNTPLQHDHTST. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03630 430 SUPERFAMILY DNA-binding pseudobarrel domain 295 396 IPR015300 -
Seca4g03630 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Seca4g03630 430 Gene3D - 279 400 IPR015300 -
Seca4g03630 430 Gene3D - 1 98 IPR015300 -
Seca4g03630 430 MobiDBLite consensus disorder prediction 401 430 - -
Seca4g03630 430 MobiDBLite consensus disorder prediction 137 173 - -
Seca4g03630 430 ProSiteProfiles B3 DNA-binding domain profile. 302 397 IPR003340 GO:0003677
Seca4g03630 430 MobiDBLite consensus disorder prediction 134 173 - -
Seca4g03630 430 Pfam B3 DNA binding domain 9 95 IPR003340 GO:0003677
Seca4g03630 430 Pfam B3 DNA binding domain 305 396 IPR003340 GO:0003677
Seca4g03630 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Seca4g03630 430 PANTHER B3 DOMAIN-CONTAINING 3 385 - -
Seca4g03630 430 SMART B3_2 302 397 IPR003340 GO:0003677
Seca4g03630 430 SMART B3_2 6 98 IPR003340 GO:0003677
Seca4g03630 430 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Seca4g03630 430 CDD B3_DNA 300 395 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03630 Seca-Chr4 62783688 62787522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03630 1 401 B3 DNA Binding Superfamily AT3G18990 49.754 1.20e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03630 B3 4.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03630 - - gmx:100813285 659.833