Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03615 ATGACCATCATCCCTCCTTCTCAGCCGCCTCTGCATCAACATCACCATCATCTTCGGGCCCCATCTCCATCTCCAATGCCTCTCATCAACAAGTCTTCTTTACCTTCCCTGTCAAAGTCGCCGGCGGTCGACTTCAGCCCGCCCCTCATAGCAATGGTCGTCGTCGTCGCCACCGCCTTCGTCGTCGTAACCTATTCCCGCCTCATCAGCCGCCACCTCAGGCCACCAATCCAGCGCCTACTCCGGCATTTCCGGCGGCGCAGGTTCCTGCCGCCCTCCTCTGTAGGCGACGTGGAGTCCCTCCAATACGATTCAACGTTGGATGGTCCACAAGTCTTCTCACCCTACGGCCTCGATGAGTCAGTGATCAAAACCATCCCCTTCTCCCTTTACACCGCTAAATACGAAGAGTCTCTCCGTGACTGCGCCGTTTGCTTGCTGGAATTTGAAAACGACGATTACGTTCGCACGCTCCCCGTTTGTTCTCACACCTTCCACGTGGATTGTATCGACGCCTGGCTTCGTTCACACGCTAACTGCCCTCTCTGCCGTGCCGGGGTTCTCTGCGCTGAATCACCCTTCACACCTCTCATGGCTGCAAGGATCCGCCCCAGCTTCGATGACCATGCCATTCTCCATATAGACACTTCCCTCGATGCTCCCTCTCATTCCCCTCTCCCGGAGATAACTCCCTGCGTCGACGACCACTCCCCGAGGAGGACAAACGCAAATTCAGAGGATCGTTTTAACGCCAGGGACTTTCTTCTGAAGCGTTCTTATTCGTTTGGCTTCGAGCGTAGCTTGCCGTCGGAGAGGATGGTAATCGACCCGGCCACGGCTTCGCCGTGGCGATACCGGAGAGGAAGCAGCAGTTTCTGGAGCAAGAGACCGTCGCCGTTTGGGTCCCTGGGGAAGTCGAGGGTGTTTTCGTTTAGATATTACAGAGGGATGAAATCGCCGTTTTTCCGCCGGAGGGGATTCTTCCCGTTGTCGGAGTCGAGCATGAGGTACGCCGCCGGCGGGAGCTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCTATGTTCCTGAGATCATCGGCGGCGGCGACGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGTGATCCTGAAGCGCTACTGTCGCCGGAGAGGTTTAATAGAAGATGA 1167 0.5741 MTIIPPSQPPLHQHHHHLRAPSPSPMPLINKSSLPSLSKSPAVDFSPPLIAMVVVVATAFVVVTYSRLISRHLRPPIQRLLRHFRRRRFLPPSSVGDVESLQYDSTLDGPQVFSPYGLDESVIKTIPFSLYTAKYEESLRDCAVCLLEFENDDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCAESPFTPLMAARIRPSFDDHAILHIDTSLDAPSHSPLPEITPCVDDHSPRRTNANSEDRFNARDFLLKRSYSFGFERSLPSERMVIDPATASPWRYRRGSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSMRYAAGGSSSRRSKSIASPMFLRSSAAATAAFSSSRLRCGDPEALLSPERFNRR. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03615 388 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g03615 388 SUPERFAMILY RING/U-box 125 189 - -
Seca4g03615 388 Pfam Ring finger domain 141 184 IPR001841 -
Seca4g03615 388 CDD RING-H2_EL5-like 141 184 - -
Seca4g03615 388 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Seca4g03615 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 188 IPR013083 -
Seca4g03615 388 PANTHER RING-H2 FINGER PROTEIN ATL16 33 202 IPR044600 GO:0016567|GO:0016740
Seca4g03615 388 SMART ring_2 142 183 IPR001841 -
Seca4g03615 388 FunFam RING-H2 finger protein ATL65 111 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03615 Seca-Chr4 62556211 62557377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03615 36 388 C3H Transcription Factor Family AT3G18930 51.000 7.25e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03615 - K19041 gmx:100795347 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03615 4 62556211 62557377 Seca4g03615 4 62556211 62557377 ECH