Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03606 ATGACTAACGCAGCTGAGAAGAACCTTGATTTCTTCAAAGTCTTCCTTCCAGAACGACACTCTGAAGGAATGTTTATCCCAAAAGTGAAGTTGAAACTCTTTGAAGAAAAGGTAATTAAGGTTGTCATCCTTAGAAATCATAGTGGAAGAATTTGGCATGTCAAAATTCGTCCTATTAATGGTCAATTCTGTTTTGAGGATGGTTGGAAGCGTTTCCGAGAAGAAAATTGTTTGAAGGCTGCTGACTTTTTAATTTTTACATATTTGGGGAACAATGAGTTCAACGTTAAAATCCTTGAACTATCATCCAAGTGTAAAAAGATAATGGATGAGAATGAACTTGGAGAAGAAAATGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAATGACAAAGACAATGAGGAAGACTATGATTATGATGTTGAGGATGATACTGATTTTGTTGATGATGAGAATATAGATATGGAGGAAGACTATGATGATTCTGAAGATGATGAGAATACGGATAAGAAAGAAGAATTCAATGCAAACATGAAGAGTCAATCTTATTGTAGCGCCTGCAAAGGCAAAATTGATTTAGGGAATGTTGGGAGCTGTTCTTACACCAAGGTTGATCCTCAACTTGAAGAAGACTACGAAACTGATGAAGAAATTTATGTTCAGCCAAATAATCCATACTTTGTTGCAAAACTGGTTAAGAGCAGACCTAACGAATTGCATATTCCAAAGAATATCATTAAAGACTTTTCCCTTAGCTTTCCAAAAAAGATTGCCATTTTATGTTGCAAATGCAAGAATTTGAAACCGCATTTATCACAGAATATTCAAAGGAATGAAGTAGAAGCCTATCATCTCAACTTGCCGCCACCACAGACACCCATTCCCAAAAAATATCGGAGAGGACAAGTGTCTACATGGAAAGATGGTCGAGTATGTATCAACGGGTGGGCAGATTTTTGTGAAAAGTACAAGATTGAAGAAACTGATGTATGCATCTGTGAAATTGTGATGCGGCAACACAATATGGTCGAAATGTTACGAGTGCACGTTCGTCGCGCTATGAAGGAATGA 1080 0.3685 MTNAAEKNLDFFKVFLPERHSEGMFIPKVKLKLFEEKVIKVVILRNHSGRIWHVKIRPINGQFCFEDGWKRFREENCLKAADFLIFTYLGNNEFNVKILELSSKCKKIMDENELGEENDDIMDLEEEEEQENDKDNEEDYDYDVEDDTDFVDDENIDMEEDYDDSEDDENTDKKEEFNANMKSQSYCSACKGKIDLGNVGSCSYTKVDPQLEEDYETDEEIYVQPNNPYFVAKLVKSRPNELHIPKNIIKDFSLSFPKKIAILCCKCKNLKPHLSQNIQRNEVEAYHLNLPPPQTPIPKKYRRGQVSTWKDGRVCINGWADFCEKYKIEETDVCICEIVMRQHNMVEMLRVHVRRAMKE. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03606 359 Coils Coil 107 138 - -
Seca4g03606 359 Pfam B3 DNA binding domain 11 99 IPR003340 GO:0003677
Seca4g03606 359 Gene3D - 210 358 IPR015300 -
Seca4g03606 359 SUPERFAMILY DNA-binding pseudobarrel domain 224 350 IPR015300 -
Seca4g03606 359 CDD B3_DNA 11 99 IPR003340 GO:0003677
Seca4g03606 359 PANTHER B3 DOMAIN-CONTAINING 7 341 - -
Seca4g03606 359 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Seca4g03606 359 Gene3D - 2 105 IPR015300 -
Seca4g03606 359 SMART B3_2 11 102 IPR003340 GO:0003677
Seca4g03606 359 MobiDBLite consensus disorder prediction 116 155 - -
Seca4g03606 359 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03606 Seca-Chr4 62465176 62466952 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03606 11 355 B3 DNA Binding Superfamily AT3G06160 24.713 4.12e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03606 B3 3.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03606 - - cam:101489737 261.536