Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03605 ATGAACACCCTGGAGTGCAGAGGTTTCACAGAAGAGCAAGAAGCTCTGGTGGTAAAGTCATGGAATGCAATGAAGAAGAATTCTGCTGAGCTGACTCTCAAGTTTTTCTTGAAGTATCTAAGAATTCAGCATGTCAATGTTCGTCCTTTTAATGGTCAATTCTGTTTTGAGGATGGTTGGAAGCGTTTCCGAGAAGAAAACTGTTTAAAGGCTGCTGACTTTTTAGTTTTTACATATTTGGGGAAGAATAAGTTCAATGTTAAAATCCTTGAACTATCATCCAAGTGTGAAAAGATAATGGATGAGAATGAACTTGGAGAAGAAAATGATGACATTATGGAAGAGGAAGAACAAGAAAAAGAAAAAGACAGTGAGAAAGGCTATGACTATGATGACGAGGATGATACTGATTTTGTTGAATCAATGTCTAATAAAGCCAAGATGACTAACGCAGCTGAGAAGAACCCTGATTTCTTCAAAGTATTCCTTCTAGAACGACACTCTGAAGGAATGGTAATTAAGGTTGTCAACCTTAGAAATCACAGTGGAAGAATTCGGCATGTCAATGTTCATCCTATTAATGGTCAATTCTGTTTTGAGGATGGTTGGAAGCGTTTCCGAGAAGAAAACTGTTTAAAGGCTGCTGACTTTTTAGTTTTTACATATTTGGAGAAAAATGAGTTCAATGTTAAAATCCTTGAACTATCATCCAAGTGTGAAAAGATAATGGATGAGAATGAACTTGGAGAAGAAAATGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGATAGTGAGAAAGGCTATGACTATGATGACGAGGATGATACTGATTTTGTTGAATCAATGTCTAATAAAGCCAAGATGACTAACGCAGCTGAGAAGAACATTGATTTCTTTAAAGTATTCCTTCCAGAACGACACTCTGAAGGAATGTTTATCCCAAAAATGAAGTTGAAACTCTTTGAAGAAAAGGATGGTTGGAAGCGTTTCCGAGAAGAAAATTGTTTAAAGGCTGCTGACTTTTTAGTTTTTACATATTTGGGGAACAATGAGTTCAACGTTAAAATCCTTGAACTATCATCCAAGTGTGAAAAGATAATGGATGAGAATGAACTTGGAGAAGAAAAGGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGACAGTGAGAAAGGCTATGACTATGATGACGAGGATGATACTGATTTTGTTGAATCAGTATCTAATAAAGCCAAAGAGTTCGCACTTTTGGAGACAATAAAAGAAGCAGTGCCTGAAATGTGGTCATCTGCTATGAAGAATGCATGGGGAGAAGCTTATGATCACCTGGTCGGTGCTATTGAATCTTAA 1383 0.3659 MNTLECRGFTEEQEALVVKSWNAMKKNSAELTLKFFLKYLRIQHVNVRPFNGQFCFEDGWKRFREENCLKAADFLVFTYLGKNKFNVKILELSSKCEKIMDENELGEENDDIMEEEEQEKEKDSEKGYDYDDEDDTDFVESMSNKAKMTNAAEKNPDFFKVFLLERHSEGMVIKVVNLRNHSGRIRHVNVHPINGQFCFEDGWKRFREENCLKAADFLVFTYLEKNEFNVKILELSSKCEKIMDENELGEENDDIMDLEEEEEQEKDKDSEKGYDYDDEDDTDFVESMSNKAKMTNAAEKNIDFFKVFLPERHSEGMFIPKMKLKLFEEKDGWKRFREENCLKAADFLVFTYLGNNEFNVKILELSSKCEKIMDENELGEEKDDIMDLEEEEEQEKDKDSEKGYDYDDEDDTDFVESVSNKAKEFALLETIKEAVPEMWSSAMKNAWGEAYDHLVGAIES. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03605 460 PANTHER B3 DOMAIN-CONTAINING 153 278 - -
Seca4g03605 460 MobiDBLite consensus disorder prediction 250 281 - -
Seca4g03605 460 Coils Coil 241 268 - -
Seca4g03605 460 MobiDBLite consensus disorder prediction 250 266 - -
Seca4g03605 460 MobiDBLite consensus disorder prediction 105 131 - -
Seca4g03605 460 SUPERFAMILY Globin-like 426 458 IPR009050 -
Seca4g03605 460 SUPERFAMILY DNA-binding pseudobarrel domain 154 234 IPR015300 -
Seca4g03605 460 MobiDBLite consensus disorder prediction 379 412 - -
Seca4g03605 460 ProSiteProfiles B3 DNA-binding domain profile. 176 236 IPR003340 GO:0003677
Seca4g03605 460 SUPERFAMILY DNA-binding pseudobarrel domain 41 91 IPR015300 -
Seca4g03605 460 CDD B3_DNA 158 233 IPR003340 GO:0003677
Seca4g03605 460 Gene3D - 14 96 IPR015300 -
Seca4g03605 460 Gene3D - 131 239 IPR015300 -
Seca4g03605 460 Gene3D - 326 369 IPR015300 -
Seca4g03605 460 SUPERFAMILY DNA-binding pseudobarrel domain 300 364 IPR015300 -
Seca4g03605 460 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Seca4g03605 460 Coils Coil 371 398 - -
Seca4g03605 460 Coils Coil 102 122 - -
Seca4g03605 460 MobiDBLite consensus disorder prediction 379 396 - -
Seca4g03605 460 ProSiteProfiles B3 DNA-binding domain profile. 332 366 IPR003340 GO:0003677
Seca4g03605 460 Pfam B3 DNA binding domain 174 233 IPR003340 GO:0003677
Seca4g03605 460 Gene3D Globins 415 460 IPR012292 GO:0019825|GO:0020037
Seca4g03605 460 SMART B3_2 13 93 IPR003340 GO:0003677
Seca4g03605 460 SMART B3_2 304 366 IPR003340 GO:0003677
Seca4g03605 460 SMART B3_2 158 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03605 Seca-Chr4 62455876 62459507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03605 148 234 REM Transcription Factor Family AT3G53310 32.000 8.89e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03605 B3 1.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03605 - - cam:101489737 109.768