Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03604 ATGGATGAGAATGAACTTGGAGAGGAAAAGGATGACATTATGGATTTGGAGGAAAAGGAAGAACAACAAAAAGACAAAGATAGTGAGAAAGGCTATGACTATGATGTCGATGATGATACTGCTTTTGTTAAATCAGTAACTAATAAAGCCAAGATGACTAACCCAACTGAGAAGAACCCTGATTTCTTCAAAGTATTCCTTCCAGAACGACACTATGAAGGAATGCTTATCCCAAAAATGAAGTTGAAACTCTTTCAAGAAAAGGTAATTAAGGTTGTCATCCTTAGAAATCGCAGTGGAAGAATTTGGCATGTCAAAGTTCGTCCTATTAATGGTCAATTCTGTTTTGAGGATGGTTGGAAGCGTTTCCCAGAAGAAAATTGTTTAAAGGCTGCTGACTTTTTAGTTTTTACATATTTGGGGAACAATGAGTTCAACGTTAAAATCCTTGAACTATCATCCAAGTGTGAAAAGATAATGGATGAGAATGAACTTGGTGATGGGAGAAACAACAATAACAATACAGAGCACACTCAAATAGTTATGCAGCGGAAAAAAAAATCCCCCTAA 570 0.3614 MDENELGEEKDDIMDLEEKEEQQKDKDSEKGYDYDVDDDTAFVKSVTNKAKMTNPTEKNPDFFKVFLPERHYEGMLIPKMKLKLFQEKVIKVVILRNRSGRIWHVKVRPINGQFCFEDGWKRFPEENCLKAADFLVFTYLGNNEFNVKILELSSKCEKIMDENELGDGRNNNNNTEHTQIVMQRKKKSP. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03604 189 Gene3D - 52 156 IPR015300 -
Seca4g03604 189 SUPERFAMILY DNA-binding pseudobarrel domain 57 152 IPR015300 -
Seca4g03604 189 SMART B3_2 62 153 IPR003340 GO:0003677
Seca4g03604 189 MobiDBLite consensus disorder prediction 17 33 - -
Seca4g03604 189 MobiDBLite consensus disorder prediction 1 33 - -
Seca4g03604 189 Pfam B3 DNA binding domain 62 150 IPR003340 GO:0003677
Seca4g03604 189 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g03604 189 CDD B3_DNA 60 150 IPR003340 GO:0003677
Seca4g03604 189 Coils Coil 6 26 - -
Seca4g03604 189 ProSiteProfiles B3 DNA-binding domain profile. 75 153 IPR003340 GO:0003677
Seca4g03604 189 PANTHER B3 DOMAIN-CONTAINING 55 177 - -
Seca4g03604 189 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03604 Seca-Chr4 62442999 62443786 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03604 52 151 REM Transcription Factor Family AT3G53310 34.000 6.98e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03604 B3 2e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03604 - - cam:101489737 124.405