Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03601 ATGGATGAGAATGAACTTGAAGAAGAAAAGGATGACATTATGGATTTGGAGGAAGAGAAAGAACAAGAAAAAGACAAAGACAGGGAGAAAGGCTATGACTATGATGACGAGGATGATATTGATTTTGTTGAATCAGTATCTAATAAAGCCAACATGACTAACGCAGCTGAGAAGAACCCTGATTTCTTCAAAGTATTCCTTCTAGAACGACACTTTGAAGGAATGTGTGAAAACATAATGGTTGAGAATGAACTTGGAGAAGAAAATGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGACAGTGAGAAAGGCTATGACTATGATGACGAGGATGATACTGATTTTGTTGAATCAGTATCTAATAAAGCCAACGTAATGCAAAGAAATCACAGTGGAAGAATTTGGCATGTCAAAGTTCATCCTATTAATGGTCAATTCTGTTTTGAGGATGGTTGGAAGCGTTTCCGAAAAAAAAATTGTTTAAAGGCCGCTGACTTTTTAGTTTTTACATATTTGGGGAACAATGAGTTCAACGTTAAAATCCTTGAACTATCATCCAAGTGTGAAAAGATAATGGATGAGAATGAACTTGGAGAAGAAAATGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGATAGTGAGAAAGGTTATGACTGTGAATACGAGGATGATACTGATTTTGTTGAATCAGTATCTAATAAAGCCAACATGACTAACGCAGCTGAGAAGAACCCAAATTTCTTCAAAATATTCCTTCCAGAACAACACTCTGAAGGAATGTGTGAAAAAATAATGGATGAGAATGAACTTGGAGAGGAAAAGGATGACATTATGGATTTGGAGGAAGAGGAAGAACACGAAAATGACAAAGATAGTGAGAAAGGCTATGACTGTGAATACGAGGATGATATTGATTTTGTTGAATCAGTATCTAATAAAGCCAACATGACTAACGCTGCTGAGAAGAACCCAAATTTCTTCAAAATATTCCTTCCAGAACAACACTCTGAAGGAATGTGTGAAAAAATAATGGATGAGAATGAACTTGGAGAGGAAAAGGATGACATTATGGATTTGGAGGAAGAGGAAGAACACGAAAATGACAAAGATAGTGAGAAAGGCTATGACTGTGAATACGAGGATGATATTGATTTTGTTGAATCAGTATCTAATAAAGCCAACATGACTAACGCTGCTGAGAAGAACCCAAATTTCTTCAAAATATTCCTTCCAGAACAACACTCTGAAGGAATGTGTGAAAAAATAATGGATGAGAATGAACTTGGAGAGGAAAAGGATGACATTATGGATTTGGAGGAAGAGGAAGAACAAGAAAAAGACAAAGATAGTGAGAAAGGCTATGACTATGATGTCAAGGATGTTACTGATTTTGTTAAATCAGTATCTAATAAAGCCAAGATGAATAACGCAGCTGAGAAGAACCCTGATTTCTTCAAAGTATTCCTTCCAGAACGACACTCTGAAGGAATGCTTATCCCAAAAATGAAGTTGAAACTCTTTCAAGAAAAGGTAATTAAGGTTGTCATCCTTAGAAATCGTAGTGGAAGAATTTGGCGTGTCAAAGTTCGTCCTATTAATGGTTAA 1641 0.3583 MDENELEEEKDDIMDLEEEKEQEKDKDREKGYDYDDEDDIDFVESVSNKANMTNAAEKNPDFFKVFLLERHFEGMCENIMVENELGEENDDIMDLEEEEEQEKDKDSEKGYDYDDEDDTDFVESVSNKANVMQRNHSGRIWHVKVHPINGQFCFEDGWKRFRKKNCLKAADFLVFTYLGNNEFNVKILELSSKCEKIMDENELGEENDDIMDLEEEEEQEKDKDSEKGYDCEYEDDTDFVESVSNKANMTNAAEKNPNFFKIFLPEQHSEGMCEKIMDENELGEEKDDIMDLEEEEEHENDKDSEKGYDCEYEDDIDFVESVSNKANMTNAAEKNPNFFKIFLPEQHSEGMCEKIMDENELGEEKDDIMDLEEEEEHENDKDSEKGYDCEYEDDIDFVESVSNKANMTNAAEKNPNFFKIFLPEQHSEGMCEKIMDENELGEEKDDIMDLEEEEEQEKDKDSEKGYDYDVKDVTDFVKSVSNKAKMNNAAEKNPDFFKVFLPERHSEGMLIPKMKLKLFQEKVIKVVILRNRSGRIWRVKVRPING. 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03601 546 Coils Coil 354 381 - -
Seca4g03601 546 ProSiteProfiles B3 DNA-binding domain profile. 131 191 IPR003340 GO:0003677
Seca4g03601 546 PANTHER B3 DOMAIN-CONTAINING 57 354 - -
Seca4g03601 546 MobiDBLite consensus disorder prediction 96 119 - -
Seca4g03601 546 MobiDBLite consensus disorder prediction 17 33 - -
Seca4g03601 546 MobiDBLite consensus disorder prediction 1 39 - -
Seca4g03601 546 Gene3D - 118 194 IPR015300 -
Seca4g03601 546 Gene3D - 487 546 IPR015300 -
Seca4g03601 546 Coils Coil 433 460 - -
Seca4g03601 546 Pfam B3 DNA binding domain 129 188 IPR003340 GO:0003677
Seca4g03601 546 SUPERFAMILY DNA-binding pseudobarrel domain 134 189 IPR015300 -
Seca4g03601 546 Coils Coil 275 302 - -
Seca4g03601 546 SMART B3_2 62 191 IPR003340 GO:0003677
Seca4g03601 546 Coils Coil 78 105 - -
Seca4g03601 546 MobiDBLite consensus disorder prediction 1 16 - -
Seca4g03601 546 Coils Coil 196 223 - -
Seca4g03601 546 CDD B3_DNA 134 188 IPR003340 GO:0003677
Seca4g03601 546 MobiDBLite consensus disorder prediction 201 221 - -
Seca4g03601 546 MobiDBLite consensus disorder prediction 201 231 - -
Seca4g03601 546 Coils Coil 3 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03601 Seca-Chr4 62419953 62425411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03601 130 206 B3 DNA Binding Superfamily AT5G60130 34.146 1.33e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03601 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03601 - - cam:101489737 110.153