Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03589 ATGGACGATTACGTGAGCAGCGACGACGATTACCGTTACTCTGATCAGGAGGACTCCGTCGACGACGCTTTCGAAAACGAGGACCACGATTATCAGTTGCTCTCTTCCAAGGGCCCCACTACTCAGGTGATAACGAAGGAATCACTGCTAGCTGCACAGAGGGAGGATTTGCGCAGAGTGATGGACATGCTATCTTTAAAAGAGCAACATGCACGAACTCTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGATAGGGGGAAAGCATTTCTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCATGAGTCTGACTCATCTGTTCGCGGTTCAGTAATGTGTGAAATATGCATAGAGGACGTTCCTACTAATGAATCGACAAGAATGGACTGTGGTCATGGCTTCTGCAACTCCTGTTGGACAGAGCATTTTATAGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCATACAAATGTAATTCCATTTGTGATGAAGCTGTAGTAAGATCTCTACTCAATATAAAGCACTCTGACATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGTGTTGAGGAAGATGACTTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGCTTTAATTGCTTGTCAGAAGCGCACTCCCCTTGTTCATGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAGACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCGAAGTGCCATAAACCGGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGACAAGCATTTTGTTGGTTGTGTGGTGGAGCCACTGGCCGAGAGCACACTTGGTCAAGTATAGCTGGTCATAGTTGTGGTCGCTACAAAGACCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTATATAGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAGGAGGCCATACAAGGGAAGATTGCTATTTCAGAAGAAAAGGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTTGAAAATCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTAATGATGATAAGGTCATGGAGATAAGGATGAGGATAATCAATCTGTCATCAATTATTGACAAACTTTGTCAAAAAATGTAA 1467 0.4124 MDDYVSSDDDYRYSDQEDSVDDAFENEDHDYQLLSSKGPTTQVITKESLLAAQREDLRRVMDMLSLKEQHARTLLIYHRWDVEKLFAVYVDRGKAFLFAEAGVSVDEHHESDSSVRGSVMCEICIEDVPTNESTRMDCGHGFCNSCWTEHFIVKINEGQSKRIRCMAYKCNSICDEAVVRSLLNIKHSDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEEDDLCEVECSCGLQFCFNCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKDQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKEAIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVENLSKILEEPFETFNDDKVMEIRMRIINLSSIIDKLCQKM. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03589 488 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Seca4g03589 488 Pfam Ariadne domain 331 488 IPR045840 -
Seca4g03589 488 CDD RING-HC_RBR_TRIAD1 119 172 - -
Seca4g03589 488 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Seca4g03589 488 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g03589 488 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
Seca4g03589 488 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Seca4g03589 488 Coils Coil 434 454 - -
Seca4g03589 488 FunFam RBR-type E3 ubiquitin transferase 250 488 - -
Seca4g03589 488 CDD Rcat_RBR_ARI1-like 275 328 - -
Seca4g03589 488 CDD BRcat_RBR_ANKIB1 199 263 - -
Seca4g03589 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 207 IPR013083 -
Seca4g03589 488 Gene3D - 250 488 - -
Seca4g03589 488 SUPERFAMILY RING/U-box 262 319 - -
Seca4g03589 488 SUPERFAMILY RING/U-box 192 260 - -
Seca4g03589 488 SMART ibrneu5 192 254 IPR002867 GO:0008270
Seca4g03589 488 SMART ibrneu5 262 327 IPR002867 GO:0008270
Seca4g03589 488 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 395 IPR031127 GO:0004842|GO:0016567
Seca4g03589 488 SUPERFAMILY RING/U-box 118 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03589 Seca-Chr4 62315978 62320798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03589 61 488 ARIADNE family AT2G16090 72.917 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03589 K11968 - gmx:100783343 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03589 4 62315978 62320798 Seca4g03589 4 62315978 62320798 ECH