Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03575 ATGGATGATCACGTTTCAATTCAGGGTTCTTTACAATTTGGAACATTTCAGAGTAATGAAGTGCATACAGGATTGGATGTTACTTGTTCAGAATCCTCTTCATTTAGTGATATGGGTAATTCAGAAAATGAATGTGATAATGAAGAAATAGAGACACCAATAATTGTGACTAAGGAGCAAGATCAATATGAGCCAAAAATTGGTATGATATTTTCAAATGAAGATGAAGCTTATAAATTCTATAATGAGTATGCTAAATTCATCGGGTTTACTGTGAGAAGAAACCAATATCGAAGATTGGCAGATGGAACTTTAAGGCAAAGGACATTTGTTTGTGGAAGAGAGGGGCATAGAAAGCCAAAGGACCCTTCACATGTGAGCAAGATTAATAGGAAAGAAACGAGAACTGGTTGTCCAACCATGATATGCTTTACCATTGAAAAGGATACTTGGATTGTTTTTAAATTCATTTCTGATCATAATCATGATCTAGTGAACTCTTCTGCTCGGGCTATGTTACGATCACAAAGACATGTAGATGAAGCACATGCTAATATATTTGAAGTTATGGACAATGCTGGTATCAAACCGTGTGGTATGTATTCATATTTTGTTGAAGCTGCTGGAGGAGTCCAAAATGTTGGGTTTTTAAAATCTGATTGTGACAATTTTTTACAAAGCAAGAGAAGCAACACTCTTGAAGCAGGAGACGCACAAAGTGTTATTAACCATTTCAAAAGTTTGCAAGCAAATGATCCATCCTTTTTCTACACAATACAAGTAGATTATGAAAATCGCATGACTAACTTTTTTTGGAGAGATGACATATCAAGGACAGATTATTGTCACTTTGGAGATGTAGTCATTTTTGACACAACCTATCGTACAAATAAGTACAATATGGCTTGTGCACCATTTATTGGGGTAAATCATCATAAGCAAAGTATTTTGTTTGGATGTGCTTTCTTGTTGGATGAGACAACTGAGTCATTCATTTGGCTATTTGAATCATTTTTGGAAGCAATGGGTGGGATGCAACCTAAAACAATTTTTACTGATCAATGTCAAGCAATGGCTAATGCTATTAAAAGAGTTTTTCCAGAATCTCAACATCGACTTTGCTTATGGCATATTAGCCAGAATGCTCCTAAGCATCTTTCTCACTATTTAAGGAAGCCTGACTTTAAGGTTTTATTTAATAGGTGCCTCTACAATTGTGAATCAGAGAAAGAGTTTGAAGAAGTATGGGCTCATTTACTCACAAAAGTTGATCTCTCAAAATTCTCTTGGCTGAAAAAATTTTATGAGCTACGAGGAAATTGGTGCCCAACATTTAGTAAGAATTATTTTTCAGCTGGCATATTATCTACACAAAGAAGTGAGAGTATGAATAATGTTTTTCGTCATGTCACTTGCAAGACAATGTCTCTTACTCAATTCATACTCCGTTATGAGAAGGTCTTGGAGCGCAGACGCTAG 1479 0.3543 MDDHVSIQGSLQFGTFQSNEVHTGLDVTCSESSSFSDMGNSENECDNEEIETPIIVTKEQDQYEPKIGMIFSNEDEAYKFYNEYAKFIGFTVRRNQYRRLADGTLRQRTFVCGREGHRKPKDPSHVSKINRKETRTGCPTMICFTIEKDTWIVFKFISDHNHDLVNSSARAMLRSQRHVDEAHANIFEVMDNAGIKPCGMYSYFVEAAGGVQNVGFLKSDCDNFLQSKRSNTLEAGDAQSVINHFKSLQANDPSFFYTIQVDYENRMTNFFWRDDISRTDYCHFGDVVIFDTTYRTNKYNMACAPFIGVNHHKQSILFGCAFLLDETTESFIWLFESFLEAMGGMQPKTIFTDQCQAMANAIKRVFPESQHRLCLWHISQNAPKHLSHYLRKPDFKVLFNRCLYNCESEKEFEEVWAHLLTKVDLSKFSWLKKFYELRGNWCPTFSKNYFSAGILSTQRSESMNNVFRHVTCKTMSLTQFILRYEKVLERRR. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03575 492 Pfam MULE transposase domain 287 381 IPR018289 -
Seca4g03575 492 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 492 IPR031052 GO:0006355
Seca4g03575 492 Pfam FAR1 DNA-binding domain 79 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03575 Seca-Chr4 62156315 62158740 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g03575 MULE 6.2e-33 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03575 - - rcn:112203823 494.967