Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03522 ATGACGGACTCTACAACCCCACTCGTGAGCTTAAAGGTCCTCGTCCTAGCAGGCATTTTCCTTGTCATCGTGCTGTTAATAGGACTCTTGATCTTCCTCTGCTTCCGTGGGAACCGAAGCTGCAGGAACCGCAAATTGGTAGTGAAGCACAGCTCCGGCACTATCCCTTTGGTTTCCAAGGAGATCGCGGTGGTTAAGTCCTTGGATCTCACCCCTGCCTCTGACTCTGGCCAGGCGCGGATTGAAATTGAAGAGGACTCTGACGTTGATCCGAAGAAAGAGGCGGAGATCAAGGTTGAAATTGAAAAGATAAGGAAGAGTGACGTGTCCACGACGGTGGAGGATCCAAACATAGGGTGGGGACGCTGGTATACCATGAGGGAAGTGGAGATTGCGACGCGTGGATTTTCCGAAGGGAATGTGATTGGGGAAGGAGGGTATGGGGTTGTGTACAGAGGAGTTCTGCAAGATGGTTCTGTTGTTGCTGTGAAGAACCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAGGCCATTGGAAAAGTAAGGCATAAGAACTTGGTTGGTTTAGTAGGATATTGTGCTGAAGGTCCTCGAAGGATGCTTGTTTATGAATATCTTAACAACGGGAATTTGGAGCAGTGGCTGCATGGTGATGTAGGACCAGTGAGCCCCTTGACATGGGATATTCGAATGAAGATTGCCATTGGGACTGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGATCTGAGAAAAGCCATGTGACTACACGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTATGCAAGCACAGGTATGCTAAATGAGCGCAGTGATGTGTACAGCTTTGGAGTTCTGCTCATGGAGATAATTACAGGAAGATGCCCCATTGATTATTCAAGACCACCTGGAGAGGTGATTTTGGTTTTTGTCCATGTTTTCATTAGTGTATTCCATGAACACCTTGGAGTCTTACCTCTATTTGTTTGA 1113 0.4627 MTDSTTPLVSLKVLVLAGIFLVIVLLIGLLIFLCFRGNRSCRNRKLVVKHSSGTIPLVSKEIAVVKSLDLTPASDSGQARIEIEEDSDVDPKKEAEIKVEIEKIRKSDVSTTVEDPNIGWGRWYTMREVEIATRGFSEGNVIGEGGYGVVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPRRMLVYEYLNNGNLEQWLHGDVGPVSPLTWDIRMKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRCPIDYSRPPGEVILVFVHVFISVFHEHLGVLPLFV. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03522 370 FunFam Probable serine/threonine-protein kinase At1g01540 116 211 - -
Seca4g03522 370 Pfam Protein kinase domain 137 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03522 370 Gene3D Transferase(Phosphotransferase) domain 1 212 362 - -
Seca4g03522 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Seca4g03522 370 Gene3D Phosphorylase Kinase; domain 1 92 211 - -
Seca4g03522 370 FunFam Putative receptor-like serine/threonine-protein kinase 212 361 - -
Seca4g03522 370 CDD STKc_IRAK 142 347 - -
Seca4g03522 370 SMART serkin_6 136 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03522 370 ProSiteProfiles Protein kinase domain profile. 136 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g03522 370 SUPERFAMILY Protein kinase-like (PK-like) 114 352 IPR011009 -
Seca4g03522 370 ProSitePatterns Protein kinases ATP-binding region signature. 142 164 IPR017441 GO:0005524
Seca4g03522 370 PANTHER OS01G0323000 PROTEIN 4 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03522 Seca-Chr4 61168152 61172188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03522 124 350 Trihelix Transcription Factor Family AT1G70460 57.709 1.29e-84 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca4g03522 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03522 - - tpra:123913149 526.554