Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03513 ATGCTTCTTTCATGTCAAAAATACAACCTTTACCTTCCTTGCTCCTCTGTCCACTACTCCAACAACCCAACATCCACCATTGTCAAATGCCAAAACTCGAACGAGCAGCACCCCATACTTCGCAAACACAACGCCAAATCCACCGCTTTTCTCCTTCATCACCTTTCCCACAAGGACAGTGACAGTGATGATGATCACCGTTCACCCAGTGACCTACAAGACCCCACACCCGACGAAGAAAAGGTGAAGCTTTTGGAGCTTTCCCTCGTGAGGAAAAGGACCCCTCAGTTCCCTGGCTCCATTTATGCTCAGTCTCCCAGCGACCCGGATGTGGGTTCTTCTCTTCCTCCTCTGCGCACTCTGTTTCGATCAAGCGAGGAGGAAGAGGAGGAGATGATCATGCGCGCTCTTGAGATTCGCAGGAAGGTGACTGAAGAGGTTTTCAAGGAAGCCATGCGAAAGGGAAAGTTTGGAATCACTTACACCACCAATTTGGTTAGTAGGATAACTGGTTTTATTGATTACATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCGGAATATTCTCACTCCACCTTCAATTTACGCGCCAAAACTGTCATTGAAGACTCTCAAGTTGTGTCACTTATAAGATGGTTGAAGCATAATTCACTATCGTATCCTCAGATAGCAAAGCTCATTTTGATGACAAGAGGGAAACTTGACTTGATAAGGAATCGCGTTGACTGGTTGAAGTCAGTACATGTGAAAGGAGAGTTTATTGGGAATGCAATGTTGAAGTCTGGAGATAATATTTTGCTACGCAGCAATAAGGAGCTGGATGAGATTGTTGAGTATTTAGAGTCCAATGGTGTTAGGAGGGATTGGATGGGTTATGTCATTAGTAGATGTCCTGAATTGTTGTCTTACAGCTCAGAAGAAGTGAAAACTCGTGTGCAGTTCTACCTTGATATGGGTTTAGATGAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAGAGTACTTGGTTACTATACTCTGGAAGAAATGAACCAAAAGATTAATTACTTAAAAGAATTTGGGCTTCAAAGTAAGGATGTTGGCAAATTGCTGGCATTTAGGCCACAGTTGATGGCGTGCAGCATTGATGAACAATGGAAACCTCTTGTTAAGTATCTGTACTATTATGGGATCGACCGAGATGGTATGAGGAGAATGCTTACCCTTAAACCAATGGTCTTTTGTGCTGACTTGCAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACATAGGGGTTCGAAACGATGCAATTGGCAACATGCTTGTAAAGTTTCCTACTCTACTCACTTACAGCCTGGACAAGAAGATTAAGCCAGTGGTCGTATTCTTGATGACCAAGGCTGGAGTCAGTGAGAGAGATATTGGTAAGGTTGTAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAACTCGAAGTAAATGTAAAATACTTTTTGTCTCTTGGCATACGTCTTCGGCAATTGGGTGAAATGATTGCTAATTTCCCAATGCTGCTCAGATACAATACAGATGTCCTCCGTCCTAAGTATAGTTATTTGCGGAAAACGATGGTCCGGACCTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGATGGTCGAATTATCCCAAGACACAAAGTTCTGGTGGAGAATCAGATTAATGTTAAGCTGAGATACATGTTGGGTAGCACTGATGAAGAATTTAACAAAATGGTGAAGGCTCTAATTAGAAAACGCCAGAGATTTCAATCTGCTGTCATGAAGGAGGATCGTATTCGTTTCCATCTCTGCGTCGTTCGTTCGTTTTCCAGCTCTGTGTCGTTCGTTCTTTTCGATCTTGGCTCTTGCAGTTCTACTTCGTTTAAGACTTACATGTCTATTAATATTGTTTCTAATGCTAGCTGCACAACCAACTGTCTTGCTCCACTTGCAAAGATTACTAAACGAGTTGATTCGGTGGATGAGAAGATTAAGAAGCTTGATGCTGAACTTAGTAGATATAAAGAACAGATCAAGAAAACAAGACCTGGTCCCACCTCACTGGTTGTTTGCTTAGTTCATTTGTCATAA 2121 0.4215 MLLSCQKYNLYLPCSSVHYSNNPTSTIVKCQNSNEQHPILRKHNAKSTAFLLHHLSHKDSDSDDDHRSPSDLQDPTPDEEKVKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFRSSEEEEEEMIMRALEIRRKVTEEVFKEAMRKGKFGITYTTNLVSRITGFIDYIMIEAANLKRLPEYSHSTFNLRAKTVIEDSQVVSLIRWLKHNSLSYPQIAKLILMTRGKLDLIRNRVDWLKSVHVKGEFIGNAMLKSGDNILLRSNKELDEIVEYLESNGVRRDWMGYVISRCPELLSYSSEEVKTRVQFYLDMGLDEKDFGTMVFDFPRVLGYYTLEEMNQKINYLKEFGLQSKDVGKLLAFRPQLMACSIDEQWKPLVKYLYYYGIDRDGMRRMLTLKPMVFCADLQMTIVPKVKFFQDIGVRNDAIGNMLVKFPTLLTYSLDKKIKPVVVFLMTKAGVSERDIGKVVALGPELLGCSIVHKLEVNVKYFLSLGIRLRQLGEMIANFPMLLRYNTDVLRPKYSYLRKTMVRTLQDLIEFPRFFSYSLDGRIIPRHKVLVENQINVKLRYMLGSTDEEFNKMVKALIRKRQRFQSAVMKEDRIRFHLCVVRSFSSSVSFVLFDLGSCSSTSFKTYMSINIVSNASCTTNCLAPLAKITKRVDSVDEKIKKLDAELSRYKEQIKKTRPGPTSLVVCLVHLS. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03513 706 SMART mt_12 292 322 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 363 394 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 508 538 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 540 571 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 327 358 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 435 467 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 SMART mt_12 257 287 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 Gene3D Transcription termination factor 3, mitochondrial 352 595 IPR038538 -
Seca4g03513 706 Gene3D - 635 672 - -
Seca4g03513 706 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 650 657 IPR020830 GO:0016620
Seca4g03513 706 PANTHER CGI-12 PROTEIN-RELATED 223 360 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 Coils Coil 660 687 - -
Seca4g03513 706 MobiDBLite consensus disorder prediction 57 79 - -
Seca4g03513 706 Pfam mTERF 221 353 IPR003690 GO:0003690|GO:0006355
Seca4g03513 706 Pfam mTERF 343 585 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03513 Seca-Chr4 61069853 61076753 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca4g03513 mTERF 2.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03513 K15032 - mnt:21401514 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03513 4 61069853 61076753 Seca4g03513 4 61069853 61076753 ECH