Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03509 ATGGCTTCTGCAGATGTTGAGTTCCGATGCTTCGTCGGTGGGCTTGCCTGGGCCACCGACAGCGACGCTCTTGAGAAAGCCTTTTCTCCTTATGGCGAGATCGTTGAATCGAAGGTCATCAACGACCGTGAGACTGGAAGGTCAAGGGGGTTCGGATTCGTGACCTTCTCATCGGAGCAGTCGATGAGAGATGCAATCGATGCAATGAACGGCCAGAATCTTGACGGCCGTAACATCTCTGTTAACGAGGCCCAGTCCCGTGGTAGGGGTGGAAGTGGCGGCGGCGGCGGCGGCGGTGGTTACGGAGGTCGTCGTGAAGGTGGCTACAATCGAAATGGTGGTGGAGGTGGCTATGGAGGTGGTTATGGTGGTGGCAGAGACCGTGGCTATGGTGATGGTGGATCCCGCTACTCTCGCGGTGGTGGCGGCGGCGGCGGAAACTGGAGGGACTAG 453 0.585 MASADVEFRCFVGGLAWATDSDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFSSEQSMRDAIDAMNGQNLDGRNISVNEAQSRGRGGSGGGGGGGGYGGRREGGYNRNGGGGGYGGGYGGGRDRGYGDGGSRYSRGGGGGGGNWRD. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03509 150 MobiDBLite consensus disorder prediction 71 87 - -
Seca4g03509 150 PANTHER GEO13361P1-RELATED 3 144 - -
Seca4g03509 150 MobiDBLite consensus disorder prediction 71 150 - -
Seca4g03509 150 FunFam Glycine-rich RNA-binding protein GRP1A 2 112 - -
Seca4g03509 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Seca4g03509 150 Gene3D - 2 103 IPR012677 -
Seca4g03509 150 CDD RRM2_NsCP33_like 9 84 - -
Seca4g03509 150 SUPERFAMILY RNA-binding domain, RBD 8 96 IPR035979 GO:0003676
Seca4g03509 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Seca4g03509 150 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03509 Seca-Chr4 61030324 61031696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03509 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 35.443 6.72e-08 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03509 4 61030324 61031696 Seca4g03509 4 61030324 61031696 ECH