Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03507 ATGGCCTCAAGCTCTCTCAGCAAACAAAAGCATTCTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAGGCACTTGCAAAATATGATAAGGACACCCCAGAAAGATGGCAGAATGTAGCCAAAGCAGTTGGTGGAAAATCTGCAGAAGAAGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCGTATTCCAATTCCCAACTACAAGTCCACAGGAAGCACCACCAATGTTGATGAAGAAGAGAGGGCTTCTGAAGTATCTTAA 294 0.4354 MASSSLSKQKHSDSSWTPKQNKLFEKALAKYDKDTPERWQNVAKAVGGKSAEEVKRHYEILLEDLRHIESGRIPIPNYKSTGSTTNVDEEERASEVS. 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03507 97 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Seca4g03507 97 CDD SANT 15 62 IPR001005 -
Seca4g03507 97 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Seca4g03507 97 MobiDBLite consensus disorder prediction 73 97 - -
Seca4g03507 97 FunFam Transcription factor SRM1 8 75 - -
Seca4g03507 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 89 IPR044636 GO:0003700
Seca4g03507 97 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Seca4g03507 97 SMART sant 12 64 IPR001005 -
Seca4g03507 97 Gene3D - 6 75 - -
Seca4g03507 97 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03507 Seca-Chr4 60971729 60973776 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g03507 Myb_DNA-binding 9.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03507 - - gmx:100798314 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03507 4 60971729 60973776 Seca4g03507 4 60971729 60973776 ECH
Seca4g03507 4 60971729 60973776 Seca12g02727 12 47788122 47789817 ECH