Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03506 ATGTTACACTGTCTCAACACTTCTTCGGACATGACAGTGTTGGAAAGGCAAAGGGCAAGGAAAAAGTGGCAGCAACAAGAACAGGAGGAACACGATCGCCAAAGCTACTTTTGTGGAAGCACTGGGTTTTCATCTTCTTCTTCGATGCAAGTTCATGGGGGGTTGGTGATTGGGAGTGGCGATTCTGGGCTTGGTGAGGTTGTAGTTGCAGCTCAATCGATGAAACCTGACCCGGGTTTGGAAAATGGGTGGCCCGAATTAGGCAAATTTGAAACGGGTTTCGGGTCATCTTCTGGATTGGTTGTTCCTGCTGCTTCTGGGTTTGACGTGAATTCTTCAATTTCAAGGACTGGTGGAAGAGATTCAGCCATAGAGAAGGTGATGAATTCCGCATGTGGGAAGAAGAGGAAAGCTGCTGATAAGGCTCAGAATTCCAAGGTTGTTACAGAGAGTGATAGCAAAGACAAGAGGATCAAAGTAAGTGGTGGTGAAGAAGGGGAATCCAAAATCACGGAACAAACAAGCAACAAGAATAGCAAGTTGAATACAAACAAGGAAACTAGTTCAGCAGATAATTCAAAAGGGTCTGAGGTTCAAAATCAAAAGCCTGAATACATTCATGTCCGTGCACGTCGTGGTCAAGCCACTGACAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCAAGGCTTGACTTCAACATTGATGAATTGTTTGCTAAAGAGGTAAAGCCAATGCAAGTGTTTCCTCAAAGTTTTCCAACCATAGGAATGCCATCAGAAATGACTAACCCTGCTTATCTTCAGTTCAATTCAGCACAACAACTTGTTTCTTGTTGTGGTGGATTGATAAATAATATGGGGATAATCCCTCCAGATATGGCACTTCGAAGGAACATTAGTGCCCCTTTATCTTTGCCTGAAACGTATCTTGACTCATCTTGTTTCAATCAGCAAATTCTACCCACCTCAACATGGGAAGGTGATTTCCAAAACCTTTACAATATGGCTTTTGATCAAGGAAGAACTGCATCCTTTCCTTCTCAACCATTTACAGGTCTAGTTGAAGCTAGCAACTTGAAGATGGAGATGTAA 1248 0.4207 MLHCLNTSSDMTVLERQRARKKWQQQEQEEHDRQSYFCGSTGFSSSSSMQVHGGLVIGSGDSGLGEVVVAAQSMKPDPGLENGWPELGKFETGFGSSSGLVVPAASGFDVNSSISRTGGRDSAIEKVMNSACGKKRKAADKAQNSKVVTESDSKDKRIKVSGGEEGESKITEQTSNKNSKLNTNKETSSADNSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVKPMQVFPQSFPTIGMPSEMTNPAYLQFNSAQQLVSCCGGLINNMGIIPPDMALRRNISAPLSLPETYLDSSCFNQQILPTSTWEGDFQNLYNMAFDQGRTASFPSQPFTGLVEASNLKMEM. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03506 415 MobiDBLite consensus disorder prediction 167 200 - -
Seca4g03506 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 214 264 IPR011598 GO:0046983
Seca4g03506 415 CDD bHLH_AtBPE_like 204 289 - -
Seca4g03506 415 FunFam Basic helix-loop-helix transcription factor 211 283 - -
Seca4g03506 415 Pfam Helix-loop-helix DNA-binding domain 218 265 IPR011598 GO:0046983
Seca4g03506 415 MobiDBLite consensus disorder prediction 131 203 - -
Seca4g03506 415 MobiDBLite consensus disorder prediction 131 166 - -
Seca4g03506 415 SMART finulus 220 270 IPR011598 GO:0046983
Seca4g03506 415 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 121 322 IPR024097 GO:0006355
Seca4g03506 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 212 283 IPR036638 GO:0046983
Seca4g03506 415 Gene3D - 211 285 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03506 Seca-Chr4 60940228 60943133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03506 10 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.325 3.50e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g03506 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03506 - - gmx:100794256 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03506 4 60940228 60943133 Seca4g03506 4 60940228 60943133 ECH
Seca4g03506 4 60940228 60943133 Seca10g00865 10 8285325 8287481 ECH