Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03497 ATGCACCAATCACTGGTAGACCTGTCATGCTTCATTACTCGGTTTAGTCCTACTTCCTCATTCGTGCACGATCACAATGCCCCTGCATGTGTTAATAATAATGTTCTCATGGTCGAAAGTTCATCTGCTATAATGAATAACTCAAAAAAGTATGATTTTGATAACGACATTATTTTTCTGGGACCTCCAAATAACATGATCTTAGAATACAAATGTTCAATGAGTCTTGGGCAGGTTTGTATGTTGCTCAAAATAGGTCAACCTATTTATAGGAGTCGGCCAGTAATGAAGATTGAGGGAGTTGACTACTATGCATTTCGGGCTACCTTAATTGGTAAGTTACACGGTATGCATCACTCAGCAGTTGGAGCATATGCACCTTCAGAGGACTTAGCAAGAGAGGATTCTGCAAGGAAGTTGTTGACACGTATCCTTGCAGCTACTAGTAACCAAATTTGTGACTTTAATTACTATAAGGTTCAAGGCCTTGAGGAAAAAATGAAGGTTGTACTCATTGAAAATAAGGAACTTAGGATGGAGAATATATATTTAAAGGATAAATTAAGTGTTGTGAGTTACCAGGAGAATTCCATTACTGGAGAGAGATTTCACTCGGATGATCATGATATGATTGGGGTTCCTTTCATGGCATCTTGGCTACCATATCGGTCCTCAATCATAATTGCAGAAAAATTAATTTCAAGTTTTCAAACAGAGTTACCAAAGGAGGTGACTTTAAGAGATCCGGTTGGAAATGAATTTTCTGTTTCCATTGAGGAGTTATCCAACATGCACTGCTTCACAAAGGGTTTGCCACAGATGAGGGCTTTTTACCCTGTTCATTATCCAGTACACATGTGGTACAGATACGTTGGAAATGCTACATTCAGCTTTGAACTATGGCCTAAAGATGGAGAAGGCCAGATTGATTATCCTAATCCTGCTTTAAAAAAGGAAGATCATGAACAATGTGTCAACCAACCTGGGACAACATCAAACAGTGATCACGAAGATGTAAGTAGTGAAGCAGATGAAATCATGGGAGTTCGCAGTGAAGACCTATGGACGACCACACTTACTCAAGCACAGGTGGAAGGCAGGCGGGCAGTGGTTATATCGGCGAGGGTTGTGACCTCTTACTTCCACAACAGGCCAAACAACTTCCAAGTGAGATTACCAGATGACCATATCAAATCGTGGGAATTGATTTGGAATCGACGAATACCGACAGAGTGCAAAATTGGACATGGTTGGAGTGAATTTTGTACCACACATGGGCTGCAAAAAGGAGACCACATCAGGTTTTGGAAGTTGGAAAATGAAGCCTTCATCAGAATCGTTCGAACAAGATCCTCAACTTAG 1362 0.4053 MHQSLVDLSCFITRFSPTSSFVHDHNAPACVNNNVLMVESSSAIMNNSKKYDFDNDIIFLGPPNNMILEYKCSMSLGQVCMLLKIGQPIYRSRPVMKIEGVDYYAFRATLIGKLHGMHHSAVGAYAPSEDLAREDSARKLLTRILAATSNQICDFNYYKVQGLEEKMKVVLIENKELRMENIYLKDKLSVVSYQENSITGERFHSDDHDMIGVPFMASWLPYRSSIIIAEKLISSFQTELPKEVTLRDPVGNEFSVSIEELSNMHCFTKGLPQMRAFYPVHYPVHMWYRYVGNATFSFELWPKDGEGQIDYPNPALKKEDHEQCVNQPGTTSNSDHEDVSSEADEIMGVRSEDLWTTTLTQAQVEGRRAVVISARVVTSYFHNRPNNFQVRLPDDHIKSWELIWNRRIPTECKIGHGWSEFCTTHGLQKGDHIRFWKLENEAFIRIVRTRSST. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03497 453 Gene3D - 332 451 IPR015300 -
Seca4g03497 453 Pfam B3 DNA binding domain 356 446 IPR003340 GO:0003677
Seca4g03497 453 SMART B3_2 355 450 IPR003340 GO:0003677
Seca4g03497 453 Coils Coil 160 180 - -
Seca4g03497 453 CDD B3_DNA 356 441 IPR003340 GO:0003677
Seca4g03497 453 MobiDBLite consensus disorder prediction 322 341 - -
Seca4g03497 453 ProSiteProfiles B3 DNA-binding domain profile. 355 452 IPR003340 GO:0003677
Seca4g03497 453 SUPERFAMILY DNA-binding pseudobarrel domain 355 449 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03497 Seca-Chr4 60718717 60723891 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g03497 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03497 - K05051 lja:Lj1g3v2095910.1 62.003