Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g03475 ATGATATCAGGTCTCTGTGCAGCTTGTAAGAATCAAAGAATGAAGTGCCCTTCAGATTGCATCTTCTCTCCTTACTTCCCTCTTAATGATCCTCAAAGATATGCCATTGTTCACAGAATCTATGGTGGCAGCAACGTCGGAAGAATGCTTCAGCAAATTCCACCATATGTCCGAGCACAGGCTGCAGATTGTTTACATTATGAAGCATAA 210 0.419 MISGLCAACKNQRMKCPSDCIFSPYFPLNDPQRYAIVHRIYGGSNVGRMLQQIPPYVRAQAADCLHYEA. 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g03475 69 ProSiteProfiles LOB domain profile. 4 69 IPR004883 -
Seca4g03475 69 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 69 - -
Seca4g03475 69 Pfam Lateral organ boundaries (LOB) domain 6 69 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g03475 Seca-Chr4 60485204 60485413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g03475 6 69 AS2 family AT3G26660 62.500 1.70e-26 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g03475 LOB 1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g03475 - - ccaj:109810657 125.561